Abstract
QIIME (canonically pronounced "chime") is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities. Curr. Protoc. Microbiol.
| Original language | English (US) |
|---|---|
| Article number | 1E.5 |
| Journal | Current Protocols in Microbiology |
| Issue number | SUPPL.27 |
| DOIs | |
| State | Published - 2012 |
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Keywords
- 16S
- Bioinformatics
- Microbial ecology
- QIIME
- Software
- SSU
ASJC Scopus subject areas
- Microbiology
- Parasitology
- Virology
Cite this
Using QIIME to analyze 16s rRNA gene sequences from microbial communities. / Kuczynski, Justin; Stombaugh, Jesse; Walters, William Anton; González, Antonio; Caporaso, James G; Knight, Rob.
In: Current Protocols in Microbiology, No. SUPPL.27, 1E.5, 2012.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - Using QIIME to analyze 16s rRNA gene sequences from microbial communities
AU - Kuczynski, Justin
AU - Stombaugh, Jesse
AU - Walters, William Anton
AU - González, Antonio
AU - Caporaso, James G
AU - Knight, Rob
PY - 2012
Y1 - 2012
N2 - QIIME (canonically pronounced "chime") is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities. Curr. Protoc. Microbiol.
AB - QIIME (canonically pronounced "chime") is a software application that performs microbial community analysis. It is an acronym for Quantitative Insights Into Microbial Ecology, and has been used to analyze and interpret nucleic acid sequence data from fungal, viral, bacterial, and archaeal communities. The following protocols describe how to install QIIME on a single computer and use it to analyze microbial 16S sequence data from nine distinct microbial communities. Curr. Protoc. Microbiol.
KW - 16S
KW - Bioinformatics
KW - Microbial ecology
KW - QIIME
KW - Software
KW - SSU
UR - http://www.scopus.com/inward/record.url?scp=84876715756&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84876715756&partnerID=8YFLogxK
U2 - 10.1002/9780471729259.mc01e05s27
DO - 10.1002/9780471729259.mc01e05s27
M3 - Article
C2 - 23184592
AN - SCOPUS:84876715756
JO - Current Protocols in Microbiology
JF - Current Protocols in Microbiology
SN - 1934-8525
IS - SUPPL.27
M1 - 1E.5
ER -