Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates

R. Scott Spurgiesz, Teresa N. Quitugua, Kimothy L. Smith, James Schupp, Eldon G. Palmer, Rebecca A. Cox, Paul S Keim

Research output: Contribution to journalArticle

35 Citations (Scopus)

Abstract

Molecular epidemiological tools for genotyping clinical isolates of Mycobacterium tuberculosis have been developed and used to help track and contain transmission of tuberculosis. We identified 87 short sequence repeat loci within the genome of the M. tuberculosis H37Rv strain. Nine tandem repeats were found to be variable (variable-number tandem repeats [VNTRs]) in a set of 91 isolates. Fifty-seven of the isolates had only four IS6110 bands. The other 34 isolates were members of the Beijing strain family. The number of alleles of each these nine VNTRs was determined by examining each isolate. Six of the loci (Mtb-v1, -v4, -v10, -v15, -v18, and -v20) were able to differentiate the Beijing spoligotype identical isolates into seven distinct genotypes. Five of the loci (Mtb-v3, -v5, -v6, -v10, and -v15) were informative in discriminating the four-band IS6110 restriction fragment length polymorphism isolates from each other. The Nei's diversity values of each marker ranged from 0.02 to 0.59, with the number of alleles ranging from two to eight across the entire strain set. These nine loci provide a useful, discriminatory extension of VNTR typing methods for application to molecular epidemiologic studies of M. tuberculosis.

Original languageEnglish (US)
Pages (from-to)4224-4230
Number of pages7
JournalJournal of Clinical Microbiology
Volume41
Issue number9
DOIs
StatePublished - Sep 1 2003

Fingerprint

Molecular Typing
Minisatellite Repeats
Mycobacterium tuberculosis
Alleles
Tandem Repeat Sequences
Restriction Fragment Length Polymorphisms
Epidemiologic Studies
Tuberculosis
Genotype
Genome
Beijing

ASJC Scopus subject areas

  • Microbiology (medical)
  • Microbiology

Cite this

Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates. / Spurgiesz, R. Scott; Quitugua, Teresa N.; Smith, Kimothy L.; Schupp, James; Palmer, Eldon G.; Cox, Rebecca A.; Keim, Paul S.

In: Journal of Clinical Microbiology, Vol. 41, No. 9, 01.09.2003, p. 4224-4230.

Research output: Contribution to journalArticle

Spurgiesz, R. Scott ; Quitugua, Teresa N. ; Smith, Kimothy L. ; Schupp, James ; Palmer, Eldon G. ; Cox, Rebecca A. ; Keim, Paul S. / Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates. In: Journal of Clinical Microbiology. 2003 ; Vol. 41, No. 9. pp. 4224-4230.
@article{42e2e409afb54ce3a20b1d3b7a5df661,
title = "Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates",
abstract = "Molecular epidemiological tools for genotyping clinical isolates of Mycobacterium tuberculosis have been developed and used to help track and contain transmission of tuberculosis. We identified 87 short sequence repeat loci within the genome of the M. tuberculosis H37Rv strain. Nine tandem repeats were found to be variable (variable-number tandem repeats [VNTRs]) in a set of 91 isolates. Fifty-seven of the isolates had only four IS6110 bands. The other 34 isolates were members of the Beijing strain family. The number of alleles of each these nine VNTRs was determined by examining each isolate. Six of the loci (Mtb-v1, -v4, -v10, -v15, -v18, and -v20) were able to differentiate the Beijing spoligotype identical isolates into seven distinct genotypes. Five of the loci (Mtb-v3, -v5, -v6, -v10, and -v15) were informative in discriminating the four-band IS6110 restriction fragment length polymorphism isolates from each other. The Nei's diversity values of each marker ranged from 0.02 to 0.59, with the number of alleles ranging from two to eight across the entire strain set. These nine loci provide a useful, discriminatory extension of VNTR typing methods for application to molecular epidemiologic studies of M. tuberculosis.",
author = "Spurgiesz, {R. Scott} and Quitugua, {Teresa N.} and Smith, {Kimothy L.} and James Schupp and Palmer, {Eldon G.} and Cox, {Rebecca A.} and Keim, {Paul S}",
year = "2003",
month = "9",
day = "1",
doi = "10.1128/JCM.41.9.4224-4230.2003",
language = "English (US)",
volume = "41",
pages = "4224--4230",
journal = "Journal of Clinical Microbiology",
issn = "0095-1137",
publisher = "American Society for Microbiology",
number = "9",

}

TY - JOUR

T1 - Molecular typing of Mycobacterium tuberculosis by using nine novel variable-number tandem repeats across the Beijing family and low-copy-number IS6110 isolates

AU - Spurgiesz, R. Scott

AU - Quitugua, Teresa N.

AU - Smith, Kimothy L.

AU - Schupp, James

AU - Palmer, Eldon G.

AU - Cox, Rebecca A.

AU - Keim, Paul S

PY - 2003/9/1

Y1 - 2003/9/1

N2 - Molecular epidemiological tools for genotyping clinical isolates of Mycobacterium tuberculosis have been developed and used to help track and contain transmission of tuberculosis. We identified 87 short sequence repeat loci within the genome of the M. tuberculosis H37Rv strain. Nine tandem repeats were found to be variable (variable-number tandem repeats [VNTRs]) in a set of 91 isolates. Fifty-seven of the isolates had only four IS6110 bands. The other 34 isolates were members of the Beijing strain family. The number of alleles of each these nine VNTRs was determined by examining each isolate. Six of the loci (Mtb-v1, -v4, -v10, -v15, -v18, and -v20) were able to differentiate the Beijing spoligotype identical isolates into seven distinct genotypes. Five of the loci (Mtb-v3, -v5, -v6, -v10, and -v15) were informative in discriminating the four-band IS6110 restriction fragment length polymorphism isolates from each other. The Nei's diversity values of each marker ranged from 0.02 to 0.59, with the number of alleles ranging from two to eight across the entire strain set. These nine loci provide a useful, discriminatory extension of VNTR typing methods for application to molecular epidemiologic studies of M. tuberculosis.

AB - Molecular epidemiological tools for genotyping clinical isolates of Mycobacterium tuberculosis have been developed and used to help track and contain transmission of tuberculosis. We identified 87 short sequence repeat loci within the genome of the M. tuberculosis H37Rv strain. Nine tandem repeats were found to be variable (variable-number tandem repeats [VNTRs]) in a set of 91 isolates. Fifty-seven of the isolates had only four IS6110 bands. The other 34 isolates were members of the Beijing strain family. The number of alleles of each these nine VNTRs was determined by examining each isolate. Six of the loci (Mtb-v1, -v4, -v10, -v15, -v18, and -v20) were able to differentiate the Beijing spoligotype identical isolates into seven distinct genotypes. Five of the loci (Mtb-v3, -v5, -v6, -v10, and -v15) were informative in discriminating the four-band IS6110 restriction fragment length polymorphism isolates from each other. The Nei's diversity values of each marker ranged from 0.02 to 0.59, with the number of alleles ranging from two to eight across the entire strain set. These nine loci provide a useful, discriminatory extension of VNTR typing methods for application to molecular epidemiologic studies of M. tuberculosis.

UR - http://www.scopus.com/inward/record.url?scp=0041919402&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=0041919402&partnerID=8YFLogxK

U2 - 10.1128/JCM.41.9.4224-4230.2003

DO - 10.1128/JCM.41.9.4224-4230.2003

M3 - Article

C2 - 12958249

AN - SCOPUS:0041919402

VL - 41

SP - 4224

EP - 4230

JO - Journal of Clinical Microbiology

JF - Journal of Clinical Microbiology

SN - 0095-1137

IS - 9

ER -