High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers

L. J. Kenefic, J. Beaudry, C. Trim, R. Daly, R. Parmar, S. Zanecki, L. Huynh, M. N. Van Ert, David M Wagner, T. Graham, Paul S Keim

Research output: Contribution to journalArticle

21 Citations (Scopus)

Abstract

Aims: Bacillus anthracis is a genetically monomorphic bacterium with little diversity to be expected during an outbreak. This study used more rapidly evolving genetic markers on outbreak samples to ascertain genetic diversity. Methods and Results: Forty-seven isolates from a B. anthracis outbreak during the summer of 2005 in South Dakota were analysed using single nucleotide polymorphisms (SNP) and multi-locus VNTR analysis (MLVA). Results indicated that all of the outbreak strains belonged to a single clonal lineage. However, analysis of four single nucleotide repeat (SNR) markers resolved these isolates into six distinct genotypes providing insights into disease transmission. Conclusions: Strain determination of unknown B. anthracis samples can be ascertained by SNP and MLVA markers. However, comparison of many samples obtained during an outbreak will require markers with higher rates of mutation to ascertain genetic diversity. Significance and Impact of the Study: SNR4 analysis allowed discrimination of closely related B. anthracis isolates and epidemiological tracking of the outbreak. When used in conjunction with other genotyping schemes that allow broad genetic relationships to be determined, SNR markers are powerful tools for detailed tracking of natural B. anthracis outbreaks and could also prove useful in forensic investigations.

Original languageEnglish (US)
Pages (from-to)600-603
Number of pages4
JournalLetters in Applied Microbiology
Volume46
Issue number5
DOIs
StatePublished - May 2008

Fingerprint

Bacillus anthracis
Bacilli
Nucleotides
Disease Outbreaks
Minisatellite Repeats
Polymorphism
polymorphism
disease transmission
genetic marker
Single Nucleotide Polymorphism
mutation
Bacteria
genotype
Mutation Rate
bacterium
analysis
marker
Genetic Markers
summer
Genotype

Keywords

  • Bacillus anthracis
  • Single nucleotide repeat
  • SNP
  • VNTR

ASJC Scopus subject areas

  • Applied Microbiology and Biotechnology
  • Water Science and Technology
  • Fluid Flow and Transfer Processes
  • Microbiology
  • Ecology

Cite this

High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. / Kenefic, L. J.; Beaudry, J.; Trim, C.; Daly, R.; Parmar, R.; Zanecki, S.; Huynh, L.; Van Ert, M. N.; Wagner, David M; Graham, T.; Keim, Paul S.

In: Letters in Applied Microbiology, Vol. 46, No. 5, 05.2008, p. 600-603.

Research output: Contribution to journalArticle

Kenefic, L. J. ; Beaudry, J. ; Trim, C. ; Daly, R. ; Parmar, R. ; Zanecki, S. ; Huynh, L. ; Van Ert, M. N. ; Wagner, David M ; Graham, T. ; Keim, Paul S. / High resolution genotyping of Bacillus anthracis outbreak strains using four highly mutable single nucleotide repeat markers. In: Letters in Applied Microbiology. 2008 ; Vol. 46, No. 5. pp. 600-603.
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