Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis

J. Farlow, K. L. Smith, J. Wong, M. Abrams, M. Lytle, Paul S Keim

Research output: Contribution to journalArticle

128 Citations (Scopus)

Abstract

Francisella tularensis, the etiological agent of tularemia, is found throughout the Northern hemisphere. After analyzing the F. tularensis genomic sequence for potential variable-number tandem repeats (VNTRs), we developed a multilocus VNTR analysis (MLVA) typing system for this pathogen. Variation was detected at six VNTR loci in a set of 56 isolates from California, Oklahoma, Arizona, and Oregon and the F. tularensis live vaccine strain. PCR assays revealed diversity at these loci with total allele numbers ranging from 2 to 20, and Nei's diversity index values ranging from 0.36 to 0.93. Cluster analysis identified two genetically distinct groups consistent with the current biovar classification system of F. tularensis. These findings suggest that these VNTR markers are useful for identifying F. tularensis isolates at this taxonomic level. In this study, biovar B isolates were less diverse than those in biovar A, possibly reflecting the history of tularemia in North America. Seven isolates from a recent epizootic in Maricopa County, Ariz., were identical at all VNTR marker loci. Their identity, even at a hypervariable VNTR locus, indicates a common source of infection. This demonstrates the applicability of MLVA for rapid characterization and identification of outbreak isolates. Future construction of reference databases will allow faster outbreak tracking as well as providing a foundation for deciphering global genetic relationships.

Original languageEnglish (US)
Pages (from-to)3186-3192
Number of pages7
JournalJournal of Clinical Microbiology
Volume39
Issue number9
DOIs
StatePublished - 2001

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Francisella tularensis
Minisatellite Repeats
Tularemia
Disease Outbreaks
North America
Cluster Analysis
Vaccines
History
Alleles
Databases
Polymerase Chain Reaction
Infection

ASJC Scopus subject areas

  • Microbiology (medical)
  • Microbiology

Cite this

Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. / Farlow, J.; Smith, K. L.; Wong, J.; Abrams, M.; Lytle, M.; Keim, Paul S.

In: Journal of Clinical Microbiology, Vol. 39, No. 9, 2001, p. 3186-3192.

Research output: Contribution to journalArticle

Farlow, J. ; Smith, K. L. ; Wong, J. ; Abrams, M. ; Lytle, M. ; Keim, Paul S. / Francisella tularensis strain typing using multiple-locus, variable-number tandem repeat analysis. In: Journal of Clinical Microbiology. 2001 ; Vol. 39, No. 9. pp. 3186-3192.
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