Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species

Krishna K. Gopaul, Jessica Sells, Robin Lee, Stephen M Beckstrom-Sternberg, Jeffrey T Foster, Adrian M. Whatmore

Research output: Contribution to journalArticle

10 Citations (Scopus)

Abstract

Background: The zoonosis brucellosis causes economically significant reproductive problems in livestock and potentially debilitating disease of humans. Although the causative agent, organisms from the genus Brucella, can be differentiated into a number of species based on phenotypic characteristics, there are also significant differences in genotype that are concordant with individual species. This paper describes the development of a five target multiplex assay to identify five terrestrial Brucella species using real-time polymerase chain reaction (PCR) and subsequent high resolution melt curve analysis. This technology offers a robust and cost effective alternative to previously described hydrolysis-probe Single Nucleotide Polymorphism (SNP)-based species defining assays. Results: Through the use of Brucella whole genome sequencing five species defining SNPs were identified. Individual HRM assays were developed to these target these changes and, following optimisation of primer concentrations, it was possible to multiplex all five assays in a single tube. In a validation exercise using a panel of 135 Brucella strains of terrestrial and marine origin, it was possible to distinguish the five target species from the other species within this panel. Conclusion: The HRM multiplex offers a number of diagnostic advantages over previously described SNP-based typing approaches. Further, and uniquely for HRM, the successful multiplexing of five assays in a single tube allowing differentiation of five Brucella species in the diagnostic laboratory in a cost-effective and timely manner is described. However there are possible limitations to using this platform on DNA extractions direct from clinical material.

Original languageEnglish (US)
Pages (from-to)1-12
Number of pages12
JournalBMC Research Notes
DOIs
StateAccepted/In press - Dec 11 2014

Fingerprint

Brucella
Freezing
Assays
Melting
Single Nucleotide Polymorphism
Polymorphism
Nucleotides
Costs and Cost Analysis
Brucellosis
Polymerase chain reaction
Zoonoses
Livestock
Multiplexing
Agriculture
Costs
Real-Time Polymerase Chain Reaction
Hydrolysis
Genes
Genotype
Genome

Keywords

  • Brucella
  • High Resolution Melting (HRM)
  • Real time PCR
  • Species identification
  • Typing

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology(all)
  • Medicine(all)

Cite this

Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species. / Gopaul, Krishna K.; Sells, Jessica; Lee, Robin; Beckstrom-Sternberg, Stephen M; Foster, Jeffrey T; Whatmore, Adrian M.

In: BMC Research Notes, 11.12.2014, p. 1-12.

Research output: Contribution to journalArticle

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