• 9152 Citations
  • 31 h-Index
19892014

Research output per year

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Research Output

  • 9152 Citations
  • 31 h-Index
  • 45 Article
  • 1 Review article
2014

Comparative phylogenomics and evolution of the brucellae reveal a path to virulence

Wattam, A. R., Foster, J. T., Mane, S. P., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. M., Dickerman, A. W., Keim, P., Pearson, T., Shukla, M., Ward, D. V., Williams, K. P., Sobral, B. W., Tsolis, R. M., Whatmore, A. M. & O'Callaghan, D., Mar 1 2014, In : Journal of Bacteriology. 196, 5, p. 920-930 11 p.

Research output: Contribution to journalArticle

50 Scopus citations

Development and assessment of multiplex high resolution melting assay as a tool for rapid single-tube identification of five Brucella species

Gopaul, K. K., Sells, J., Lee, R., Beckstrom-Sternberg, S. M., Foster, J. T. & Whatmore, A. M., Dec 11 2014, In : BMC Research Notes. 7, 1, 903.

Research output: Contribution to journalArticle

12 Scopus citations

Incongruence between multi-locus sequence analysis (MLSA) and whole-genome-based phylogenies: Pseudomonas syringae pathovar pisi as a cautionary tale

Baltrus, D. A., Dougherty, K., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S. & Foster, J. T., Jun 2014, In : Molecular Plant Pathology. 15, 5, p. 461-465 5 p.

Research output: Contribution to journalArticle

13 Scopus citations

Phylogeography of Bacillus anthracis in the country of Georgia shows evidence of population structuring and is dissimilar to other regional genotypes

Khmaladze, E., Birdsell, D. N., Naumann, A. A., Hochhalter, C. B., Seymour, M. L., Nottingham, R., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J., Nikolich, M. P., Chanturia, G., Zhgenti, E., Zakalashvili, M., Malania, L., Babuadze, G., Tsertsvadze, N., Abazashvili, N., Kekelidze, M., Tsanava, S., Imnadze, P., Ganz, H. H. & 10 others, Getz, W. M., Pearson, O., Gajer, P., Eppinger, M., Ravel, J., Wagner, D. M., Okinaka, R. T., Schupp, J. M., Keim, P. & Pearson, T., Jul 21 2014, In : PLoS ONE. 9, 7, e102651.

Research output: Contribution to journalArticle

13 Scopus citations
2013

A decade of plague in Mahajanga, Madagascar: Insights into the global maritime spread of pandemic plague

Vogler, A. J., Chan, F., Nottingham, R., Andersen, G., Drees, K., Beckstrom-Sternberg, S. M., Wagner, D. M., Chanteau, S. & Keim, P., Mar 11 2013, In : mBio. 4, 1

Research output: Contribution to journalArticle

31 Scopus citations

The innate immune response may be important for surviving plague in wild Gunnison's prairie dogs

Busch, J. D., Van Andel, R., Stone, N. E., Cobble, K. R., Nottingham, R., Lee, J., VerSteeg, M., Corcoran, J., Cordova, J., Van Pelt, W., Shuey, M. M., Foster, J. T., Schupp, J. M., Beckstrom-Sternberg, S., Beckstrom-Sternberg, J., Keim, P., Smith, S., Rodriguez-Ramos, J., Williamson, J. L., Rocke, T. E. & 1 others, Wagner, D. M., Oct 1 2013, In : Journal of wildlife diseases. 49, 4, p. 920-931 12 p.

Research output: Contribution to journalArticle

7 Scopus citations

When outgroups fail; Phylogenomics of rooting the emerging pathogen, Coxiella burnetii

Pearson, T., Hornstra, H. M., Sahl, J. W., Schaack, S., Schupp, J. M., Beckstrom-Sternberg, S. M., O'Neill, M. W., Priestley, R. A., Champion, M. D., Beckstrom-Sternberg, J. S., Kersh, G. J., Samuel, J. E., Massung, R. F. & Keim, P., Sep 1 2013, In : Systematic Biology. 62, 5, p. 752-762 11 p.

Research output: Contribution to journalArticle

34 Scopus citations

Within-host evolution of Burkholderia pseudomallei over a twelve-year chronic carriage infection

Price, E. P., Sarovich, D. S., Mayo, M., Tuanyok, A., Drees, K. P., Kaestli, M., Beckstrom-Sternberg, S. M., Babic-Sternberg, J. S., Kidd, T. J., Bell, S. C., Keim, P., Pearson, T. & Currie, B. J., Jul 16 2013, In : mBio. 4, 4

Research output: Contribution to journalArticle

65 Scopus citations
2012

Development and validation of burkholderia pseudomallei-specific real-time pcr assays for clinical, environmental or forensic detection applications

Price, E. P., Dale, J. L., Cook, J. M., Sarovich, D. S., Seymour, M. L., Ginther, J. L., Kaufman, E. L., Beckstrom-Sternberg, S. M., Mayo, M., Kaestli, M., Glass, M. B., Gee, J. E., Wuthiekanun, V., Warner, J. M., Baker, A., Foster, J. T., Tan, P., Tuanyok, A., Limmathurotsakul, D., Peacock, S. J. & 4 others, Currie, B. J., Wagner, D. M., Keim, P. & Pearson, T., May 18 2012, In : PLoS ONE. 7, 5, e37723.

Research output: Contribution to journalArticle

27 Scopus citations

Genotyping of Brucella species using clade specific SNPs

Foster, J. T., Price, L. B., Beckstrom-Sternberg, S. M., Pearson, T., Brown, W. D., Kiesling, D. M., Allen, C. A., Liu, C. M., Beckstrom-Sternberg, J., Roberto, F. F. & Keim, P., Jun 21 2012, In : BMC microbiology. 12, 110.

Research output: Contribution to journalArticle

12 Scopus citations

Molecular epidemiologic investigation of an anthrax outbreak among heroin users, Europe

Price, E. P., Seymour, M. L., Sarovich, D. S., Latham, J., Wolken, S. R., Mason, J., Vincent, G., Drees, K. P., Beckstrom-Sternberg, S. M., Phillippy, A. M., Koren, S., Okinaka, R. T., Chung, W. K., Schupp, J. M., Wagner, D. M., Vipond, R., Foster, J. T., Bergman, N. H., Burans, J., Pearson, T. & 2 others, Brooks, T. & Keim, A. P., Aug 1 2012, In : Emerging infectious diseases. 18, 8, p. 1307-1313 7 p.

Research output: Contribution to journalArticle

50 Scopus citations

Phylogeography of Francisella tularensis subsp. holarctica, Europe

Gyuranecz, M., Birdsell, D. N., Splettstoesser, W., Seibold, E., Beckstrom-Sternberg, S. M., Makrai, L., Fodor, L., Fabbi, M., Vicari, N., Johansson, A., Busch, J. D., Vogler, A. J., Keim, P. & Wagner, D. M., Feb 1 2012, In : Emerging infectious diseases. 18, 2, p. 290-293 4 p.

Research output: Contribution to journalArticle

48 Scopus citations

Thyroid hormone-dependent development in Xenopus laevis: A sensitive screen of thyroid hormone signaling disruption by municipal wastewater treatment plant effluent

Searcy, B. T., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Stafford, P., Schwendiman, A. L., Soto-Pena, J., Owen, M. C., Ramirez, C., Phillips, J., Veldhoen, N., Helbing, C. C. & Propper, C. R., May 1 2012, In : General and Comparative Endocrinology. 176, 3, p. 481-492 12 p.

Research output: Contribution to journalArticle

21 Scopus citations
2011

An attenuated strain of Bacillus anthracis (CDC 684) has a large chromosomal inversion and altered growth kinetics

Okinaka, R. T., Price, E. P., Wolken, S. R., Gruendike, J. M., Chung, W. K., Pearson, T., Xie, G., Munk, C., Hill, K. K., Challacombe, J., Ivins, B. E., Schupp, J. M., Beckstrom-Sternberg, S. M., Friedlander, A. & Keim, P., Sep 30 2011, In : BMC Genomics. 12, 477.

Research output: Contribution to journalArticle

17 Scopus citations

Castor Bean Organelle genome sequencing and worldwide genetic diversity analysis

Rivarola, M., Foster, J. T., Chan, A. P., Williams, A. L., Rice, D. W., Liu, X., Melake-Berhan, A., Creasy, H. H., Puiu, D., Rosovitz, M. J., Khouri, H. M., Beckstrom-Sternberg, S. M., Allan, G. J., Keim, P., Ravel, J. & Rabinowicz, P. D., Jul 12 2011, In : PLoS ONE. 6, 7, e21743.

Research output: Contribution to journalArticle

53 Scopus citations

Copy number and targeted mutational analysis reveals novel somatic events in metastatic prostate tumors

Robbins, C. M., Tembe, W. A., Baker, A., Sinari, S., Moses, T. Y., Beckstrom-Sternberg, S., Beckstrom-Sternberg, J., Barrett, M., Long, J., Chinnaiyan, A., Lowey, J., Suh, E., Pearson, J. V., Craig, D. W., Agus, D. B., Pienta, K. J. & Carpten, J. D., Jan 1 2011, In : Genome research. 21, 1, p. 47-55 9 p.

Research output: Contribution to journalArticle

129 Scopus citations

Mapping copy number variation by population-scale genome sequencing

Mills, R. E., Walter, K., Stewart, C., Handsaker, R. E., Chen, K., Alkan, C., Abyzov, A., Yoon, S. C., Ye, K., Cheetham, R. K., Chinwalla, A., Conrad, D. F., Fu, Y., Grubert, F., Hajirasouliha, I., Hormozdiari, F., Iakoucheva, L. M., Iqbal, Z., Kang, S., Kidd, J. M. & 353 others, Konkel, M. K., Korn, J., Khurana, E., Kural, D., Lam, H. Y. K., Leng, J., Li, R., Li, Y., Lin, C. Y., Luo, R., Mu, X. J., Nemesh, J., Peckham, H. E., Rausch, T., Scally, A., Shi, X., Stromberg, M. P., Sütz, A. M., Urban, A. E., Walker, J. A., Wu, J., Zhang, Y., Zhang, Z. D., Batzer, M. A., Ding, L., Marth, G. T., McVean, G., Sebat, J., Snyder, M., Wang, J., Ye, K., Eichler, E. E., Gerstein, M. B., Hurles, M. E., Lee, C., McCarroll, S. A., Korbel, J. O., Collins, F. S., Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., Schafer, A. J., Sherry, S. T., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Li, J., Jian, M., Li, G., Liang, H., Tian, G., Wang, B., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., McKernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Tai, S., Wu, H., Zheng, X., Zhou, Y., Garrison, E. P., Huang, W., Indap, A., Lee, W. P., Leong, W. F., Quinlan, A. R., Ward, A. N., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Makarov, V., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Zheng-Bradley, X., Stütz, A. M., Bauer, M., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Hyland, F. C., Manning, J. M., McLaughlin, S. F., Sakarya, O., Sun, Y. A., Tsung, E. F., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Auton, A., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Aksay, G., Sahinalp, S. C., Sudmant, P. H., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Jin, H., Jostins, L., Keane, T. M., Le, S. Q., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Tyler-Smith, C., Balasubramanian, S., Bjornson, R., Du, J., Habegger, L., Haraksingh, R., Jee, J., Lam, H. Y., Jeng, J., Zhang, Z., Bank, E., Yoon, S., Kidd, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Khouri, H. M., Scott, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Feb 3 2011, In : Nature. 470, 7332, p. 59-65 7 p.

Research output: Contribution to journalArticle

710 Scopus citations

Molecular investigations of a locally acquired case of melioidosis in Southern AZ, USA

Engelthaler, D. M., Bowers, J., Schupp, J. A., Pearson, T., Ginther, J., Hornstra, H. M., Dale, J., Stewart, T., Sunenshine, R., Waddell, V., Levy, C., Gillece, J., Price, L. B., Contente, T., Beckstrom-Sternberg, S. M., Blaney, D. D., Wagner, D. M., Mayo, M., Currie, B. J., Keim, P. & 1 others, Tuanyok, A., Oct 1 2011, In : PLoS neglected tropical diseases. 5, 10, e1347.

Research output: Contribution to journalArticle

17 Scopus citations

Next-generation sequencing of Coccidioides immitis isolated during cluster investigation

Engelthaler, D. M., Chiller, T., Schupp, J. A., Colvin, J., Beckstrom-Sternberg, S. M., Driebe, E. M., Moses, T., Tembe, W., Sinari, S., Beckstrom-Sternberg, J. S., Christoforides, A., Pearson, J. V., Carpten, J., Keim, P., Peterson, A., Terashita, D. & Arunmozhi Balajee, S., Feb 1 2011, In : Emerging infectious diseases. 17, 2, p. 227-232 6 p.

Research output: Contribution to journalArticle

32 Scopus citations

Phylogeography and molecular epidemiology of Yersinia pestis in Madagascar

Vogler, A. J., Chan, F., Wagner, D. M., Roumagnac, P., Lee, J., Nera, R., Eppinger, M., Ravel, J., Rahalison, L., Rasoamanana, B. W., Beckstrom-Sternberg, S. M., Achtman, M., Chanteau, S. & Keim, P., Sep 1 2011, In : PLoS neglected tropical diseases. 5, 9, e1319.

Research output: Contribution to journalArticle

52 Scopus citations

Phylogeography of Francisella tularensis subspecies holarctica from the country of Georgia

Chanturia, G., Birdsell, D. N., Kekelidze, M., Zhgenti, E., Babuadze, G., Tsertsvadze, N., Tsanava, S., Imnadze, P., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Champion, M. D., Sinari, S., Gyuranecz, M., Farlow, J., Pettus, A. H., Kaufman, E. L., Busch, J. D., Pearson, T., Foster, J. T., Vogler, A. J. & 2 others, Wagner, D. M. & Keim, P., Jun 21 2011, In : BMC microbiology. 11, 139.

Research output: Contribution to journalArticle

27 Scopus citations
2010

A map of human genome variation from population-scale sequencing

Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M., Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L. & 348 others, Schafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Wang, S. J., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, J., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Bentley, I. D. R., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., Mc Kernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Korbel, J. O., Stütz, A. M., Humphray, I. S., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Ye, K., Fu, Y., Hyland, F. C. L., Manning, J. M., Stephen, F. M., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Mark, A. B., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Gil, A. M., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Li, Y., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Eichler, E. E., Aksay, G., Alkan, C., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., CenkSahinalp, S., Sudmant, P. H., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Matt, E. H., Jin, H., Jostins, L., Keane, T. M., Quang Le, S., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Chris Tyler-Smith, T-S., Walter, K., Zhang, Y., Gerstein, M. B., Snyder, M., Abyzov, A., Balasubramanian, S., Bjornson, R., Grubert, F., Habegger, L., Haraksingh, R., Khurana, E., Lam, H. Y. K., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., McCarroll, S. A., Zheng-Bradley, X., Batzer, M. A., Hurles, M. E., Du, J., Jee, J., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Coffey, A., Scott, C., Tyler-Smith, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Oct 28 2010, In : Nature. 467, 7319, p. 1061-1073 13 p.

Research output: Contribution to journalArticle

5116 Scopus citations

Continuing evolution of Burkholderia mallei through genome reduction and large-scale rearrangements

Losada, L., Ronningf, C. M., Deshazer, D., Woods, D., Fedorova, N., Kim, H. S., Shabalina, S. A., Pearson, T. R., Brinkac, L., Tan, P., Nandi, T., Crabtree, J., Badger, J., Beckstrom-Sternberg, S., Saqib, M., Schutzer, S. E., Keim, P. & Nierman, W. C., Oct 29 2010, In : Genome Biology and Evolution. 2, 1, p. 102-116 15 p.

Research output: Contribution to journalArticle

58 Scopus citations

Development of a rapid, cost-effective TaqMan real-time PCR assay for identification and differentiation of coccidioides immitis and coccidioides posadasii

Sheff, K. W., York, E. R., Driebe, E. M., Barker, B. M., Rounsley, S. D., Waddell, V. G., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Keim, P. S. & Engelthaler, D. M., Apr 14 2010, In : Medical Mycology. 48, 3, p. 466-469 4 p.

Research output: Contribution to journalArticle

17 Scopus citations

Diversity of human copy number variation and multicopy genes

Sudmant, P. H., Kitzman, J. O., Antonacci, F., Alkan, C., Malig, M., Tsalenko, A., Sampas, N., Bruhn, L., Shendure, J., Eichler, E. E., Altshuler, D. L., Durbin, R. M., Abecasis, G. R., Bentley, D. R., Chakravarti, A., Clark, A. G., Collins, F. S., De La Vega, F. M., Donnelly, P., Egholm, M. & 343 others, Flicek, P., Gabriel, S. B., Gibbs, R. A., Knoppers, B. M., Lander, E. S., Lehrach, H., Mardis, E. R., McVean, G. A., Nickerson, D. A., Peltonen, L., Schafer, A. J., Sherry, S. T., Wang, J., Wilson, R. K., Deiros, D., Metzker, M., Muzny, D., Reid, J., Wheeler, D., Li, J., Jian, M., Li, G., Li, R., Liang, H., Tian, G., Wang, B., Wang, W., Yang, H., Zhang, X., Zheng, H., Ambrogio, L., Bloom, T., Cibulskis, K., Fennell, T. J., Jaffe, D. B., Shefler, E., Sougnez, C. L., Gormley, N., Humphray, S., Kingsbury, Z., Koko-Gonzales, P., Stone, J., McKernan, K. J., Costa, G. L., Ichikawa, J. K., Lee, C. C., Sudbrak, R., Borodina, T. A., Dahl, A., Davydov, A. N., Marquardt, P., Mertes, F., Nietfeld, W., Rosenstiel, P., Schreiber, S., Soldatov, A. V., Timmermann, B., Tolzmann, M., Affourtit, J., Ashworth, D., Attiya, S., Bachorski, M., Buglione, E., Burke, A., Caprio, A., Celone, C., Clark, S., Conners, D., Desany, B., Gu, L., Guccione, L., Kao, K., Kebbel, A., Knowlton, J., Labrecque, M., McDade, L., Mealmaker, C., Minderman, M., Nawrocki, A., Niazi, F., Pareja, K., Ramenani, R., Riches, D., Song, W., Turcotte, C., Wang, S., Dooling, D., Fulton, L., Fulton, R., Weinstock, G., Burton, J., Carter, D. M., Churcher, C., Coffey, A., Cox, A., Palotie, A., Quail, M., Skelly, T., Stalker, J., Swerdlow, H. P., Turner, D., De Witte, A., Giles, S., Bainbridge, M., Challis, D., Sabo, A., Yu, F., Yu, J., Fang, X., Guo, X., Li, Y., Luo, R., Tai, S., Wu, H., Zheng, X., Zhou, Y., Marth, G. T., Garrison, E. P., Huang, W., Indap, A., Kural, D., Lee, W. P., Leong, W. F., Quinlan, A. R., Stewart, C., Stromberg, M. P., Ward, A. N., Wu, J., Lee, C., Mills, R. E., Shi, X., Daly, M. J., DePristo, M. A., Ball, A. D., Banks, E., Browning, B. L., Garimella, K. V., Grossman, S. R., Handsaker, R. E., Hanna, M., Hartl, C., Kernytsky, A. M., Korn, J. M., Li, H., Maguire, J. R., McCarroll, S. A., McKenna, A., Nemesh, J. C., Philippakis, A. A., Poplin, R. E., Price, A., Rivas, M. A., Sabeti, P. C., Schaffner, S. F., Shlyakhter, I. A., Cooper, D. N., Ball, E. V., Mort, M., Phillips, A. D., Stenson, P. D., Sebat, J., Makarov, V., Ye, K., Yoon, S. C., Bustamante, C. D., Boyko, A., Degenhardt, J., Gravel, S., Gutenkunst, R. N., Kaganovich, M., Keinan, A., Lacroute, P., Ma, X., Reynolds, A., Clarke, L., Cunningham, F., Herrero, J., Keenen, S., Kulesha, E., Leinonen, R., McLaren, W. M., Radhakrishnan, R., Smith, R. E., Zalunin, V., Zheng-Bradley, X., Korbel, J. O., Stütz, A. M., Bauer, M., Cheetham, R. K., Cox, T., Eberle, M., James, T., Kahn, S., Murray, L., Fu, Y., Hyland, F. C., Manning, J. M., McLaughlin, S. F., Peckham, H. E., Sakarya, O., Sun, Y. A., Tsung, E. F., Batzer, M. A., Konkel, M. K., Walker, J. A., Albrecht, M. W., Amstislavskiy, V. S., Herwig, R., Parkhomchuk, D. V., Agarwala, R., Khouri, H. M., Morgulis, A. O., Paschall, J. E., Phan, L. D., Rotmistrovsky, K. E., Sanders, R. D., Shumway, M. F., Xiao, C., Auton, A., Iqbal, Z., Lunter, G., Marchini, J. L., Moutsianas, L., Myers, S., Tumian, A., Knight, J., Winer, R., Craig, D. W., Beckstrom-Sternberg, S. M., Christoforides, A., Kurdoglu, A. A., Pearson, J. V., Sinari, S. A., Tembe, W. D., Haussler, D., Hinrichs, A. S., Katzman, S. J., Kern, A., Kuhn, R. M., Przeworski, M., Hernandez, R. D., Howie, B., Kelley, J. L., Melton, S. C., Anderson, P., Blackwell, T., Chen, W., Cookson, W. O., Ding, J., Kang, H. M., Lathrop, M., Liang, L., Moffatt, M. F., Scheet, P., Sidore, C., Snyder, M., Zhan, X., Zöllner, S., Awadalla, P., Casals, F., Idaghdour, Y., Keebler, J., Stone, E. A., Zilversmit, M., Jorde, L., Xing, J., Aksay, G., Hajirasouliha, I., Hormozdiari, F., Kidd, J. M., Sahinalp, S. C., Chen, K., Chinwalla, A., Ding, L., Koboldt, D. C., McLellan, M. D., Wallis, J. W., Wendl, M. C., Zhang, Q., Albers, C. A., Ayub, Q., Balasubramaniam, S., Barrett, J. C., Chen, Y., Conrad, D. F., Danecek, P., Dermitzakis, E. T., Hu, M., Huang, N., Hurles, M. E., Jin, H., Jostins, L., Keane, T. M., Le, S. Q., Lindsay, S., Long, Q., MacArthur, D. G., Montgomery, S. B., Parts, L., Tyler-Smith, C., Walter, K., Zhang, Y., Gerstein, M. B., Abyzov, A., Balasubramanian, S., Bjornson, R., Du, J., Grubert, F., Habegger, L., Haraksingh, R., Jee, J., Khurana, E., Lam, H. Y., Leng, J., Mu, X. J., Urban, A. E., Zhang, Z., Coafra, C., Dinh, H., Kovar, C., Lee, S., Nazareth, L., Wilkinson, J., Scott, C., Gharani, N., Kaye, J. S., Kent, A., Li, T., McGuire, A. L., Ossorio, P. N., Rotimi, C. N., Su, Y., Toji, L. H., Brooks, L. D., Felsenfeld, A. L., McEwen, J. E., Abdallah, A., Juenger, C. R., Clemm, N. C., Duncanson, A., Green, E. D., Guyer, M. S. & Peterson, J. L., Oct 29 2010, In : Science. 330, 6004, p. 641-646 6 p.

Research output: Contribution to journalArticle

415 Scopus citations
2009

Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomalleiclinical isolates from Thailand

Trunck, L. A., Propst, K. L., Wuthiekanun, V., Tuanyok, A., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Peacock, S. J., Keim, P., Dow, S. W. & Schweizer, H. P., Sep 1 2009, In : PLoS neglected tropical diseases. 3, 9, e0000519.

Research output: Contribution to journalArticle

Open Access
43 Scopus citations

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

Pearson, T., Giffard, P., Beckstrom-Sternberg, S., Auerbach, R., Hornstra, H., Tuanyok, A., Price, E. P., Glass, M. B., Leadem, B., Beckstrom-Sternberg, J. S., Allan, G. J., Foster, J. T., Wagner, D. M., Okinaka, R. T., Sim, S. H., Pearson, O., Wu, Z., Chang, J., Kaul, R., Hoffmaster, A. R. & 7 others, Brettin, T. S., Robison, R. A., Mayo, M., Gee, J. E., Tan, P., Currie, B. J. & Keim, P., Nov 18 2009, In : BMC Biology. 7, 78.

Research output: Contribution to journalArticle

110 Scopus citations

Phylogeography of francisella tularensis: Global expansion of a highly fit clone

Vogler, A. J., Birdsell, D., Price, L. B., Bowers, J. R., Beckstrom-Sternberg, S. M., Auerbach, R. K., Beckstrom-Sternberg, J. S., Johansson, A., Clare, A., Buchhagen, J. L., Petersen, J. M., Pearson, T., Vaissaire, J., Dempsey, M. P., Foxall, P., Engelthaler, D. M., Wagner, D. M. & Keim, P., Apr 1 2009, In : Journal of Bacteriology. 191, 8, p. 2474-2484 11 p.

Research output: Contribution to journalArticle

118 Scopus citations

Whole-genome-based phylogeny and divergence of the genus brucella

Foster, J. T., Beckstrom-Sternberg, S. M., Pearson, T., Beckstrom-Sternberg, J. S., Chain, P. S. G., Roberto, F. F., Hnath, J., Brettin, T. & Keim, P., Apr 1 2009, In : Journal of Bacteriology. 191, 8, p. 2864-2870 7 p.

Research output: Contribution to journalArticle

97 Scopus citations
2008

Genomic islands from five strains of Burkholderia pseudomallei

Tuanyok, A., Leadem, B. R., Auerbach, R. K., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Mayo, M., Wuthiekanun, V., Brettin, T. S., Nierman, W. C., Peacock, S. J., Currie, B. J., Wagner, D. M. & Keim, P., Nov 27 2008, In : BMC Genomics. 9, 566.

Research output: Contribution to journalArticle

64 Scopus citations
2007

A North American Yersinia pestisdraft genome sequence: SNPs and phylogenetic analysis

Touchman, J. W., Wagner, D. M., Hao, J., Mastrian, S. D., Shah, M. K., Vogler, A. J., Allender, C. J., Clark, E. A., Benitez, D. S., Youngkin, D. J., Girard, J. M., Auerbach, R. K., Beckstrom-Sternberg, S. M. & Keim, P., Feb 21 2007, In : PLoS ONE. 2, 2, e220.

Research output: Contribution to journalArticle

26 Scopus citations

Complete genomic characterization of a pathogenic A.II strain of francisella tularensis subspecies tularensis

Beckstrom-Sternberg, S. M., Auerbach, R. K., Godbole, S., Pearson, J. V., Beckstrom-Sternberg, J. S., Deng, Z., Munk, C., Kubota, K., Zhou, Y., Bruce, D., Noronha, J., Scheuermann, R. H., Wang, A., Wei, X., Wang, J., Hao, J., Wagner, D. M., Brettin, T. S., Brown, N., Gilna, P. & 1 others, Keim, P. S., Sep 26 2007, In : PLoS ONE. 2, 9, e947.

Research output: Contribution to journalArticle

33 Scopus citations
2005

Novel human α1a-adrenoceptor single nucleotide polymorphisms alter receptor pharmacology and biological function

Lei, B., Morris, D. P., Smith, M. P., Svetkey, L. P., Newman, M. F., Rotter, J. I., Buchanan, T. A., Beckstrom-Sternberg, S. M., Green, E. D. & Schwinn, D. A., Mar 1 2005, In : Naunyn-Schmiedeberg's Archives of Pharmacology. 371, 3, p. 229-239 11 p.

Research output: Contribution to journalArticle

33 Scopus citations
2003

Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome

Liu, G., Thomas, J., Touchman, J., Blakesley, B., Bouffard, G., Beckstrom-Sternberg, S., McDowell, J., Maskeri, B., Thomas, P., Zhao, S., Bailey, J. A., Sahinalp, S. C., Alkan, C., Tuzun, E., Green, E. D. & Eichler, E. E., Mar 1 2003, In : Genome research. 13, 3, p. 358-368 11 p.

Research output: Contribution to journalArticle

109 Scopus citations

Comparative analyses of multi-species sequences from targeted genomic regions

Thomas, J. W., Touchman, J. W., Blakesley, R. W., Bouffard, G. G., Beckstrom-Sternberg, S. M., Margulies, E. H., Blanchette, M., Siepel, A. C., Thomas, P. J., McDowell, J. C., Maskeri, B., Hansen, N. F., Schwartz, M. S., Weber, R. J., Kent, W. J., Karolchik, D., Bruen, T. C., Bevan, R., Cutler, D. J., Schwartz, S. & 51 others, Elnitski, L., Idol, J. R., Prasad, A. B., Lee-Lin, S. Q., Maduro, V. V. B., Summers, T. J., Portnoy, M. E., Dietrich, N. L., Akhter, N., Ayele, K., Benjamin, B., Cariaga, K., Brinkley, C. P., Brooks, S. Y., Granite, S., Guan, X., Gupta, J., Haghighi, P., Ho, S. L., Huang, M. C., Karlins, E., Laric, P. L., Legaspi, R., Lim, M. J., Maduro, Q. L., Masiello, C. A., Mastrian, S. D., McCloskey, J. C., Pearson, R., Stantripop, S., Tiongson, E. E., Tran, J. T., Tsurgeon, C., Vogt, J. L., Walker, M. A., Wetherby, K. D., Wiggins, L. S., Young, A. C., Zhang, L. H., Osoegawa, K., Zhu, B., Zhao, B., Shu, C. L., De Jong, P. J., Lawrence, C. E., Smit, A. F., Chakravarti, A., Haussler, D., Green, P., Miller, W. & Green, E. D., Sep 1 2003, In : Nature. 424, 6950, p. 788-793 6 p.

Research output: Contribution to journalArticle

486 Scopus citations

Identification and characterization of multi-species conserved sequences

Margulies, E. H., Blanchette, M., Thomas, J., Touchman, J., Blakesley, B., Bouffard, G., Beckstrom-Sternberg, S., Thomas, P., McDowell, J., Maskeri, B., Hansen, N., Idol, J., Maduro, V., Lee-Lin, S. Q., Prasad, A., Portnoy, M., Haussler, D. & Green, E. D., Dec 1 2003, In : Genome research. 13, 12, p. 2507-2518 12 p.

Research output: Contribution to journalArticle

246 Scopus citations

MultiPipMaker and supporting tools: Alignments and analysis of multiple genomic DNA sequences

Schwartz, S., Elnitski, L., Li, M., Weirauch, M., Riemer, C., Smit, A., Thomas, J., Touchman, J., Blakesley, B., Bouffard, G., Beckstrom-Sternberg, S., Thomas, P., McDowell, J., Maskeri, B., Hansen, N., Margulies, E., Green, E. D., Hardison, R. C. & Miller, W., Jul 1 2003, In : Nucleic Acids Research. 31, 13, p. 3518-3524 7 p.

Research output: Contribution to journalArticle

176 Scopus citations

Pericentromeric duplications in the laboratory mouse.

Thomas, J. W., Schueler, M. G., Summers, T. J., Blakesley, R. W., McDowell, J. C., Thomas, P. J., Idol, J. R., Maduro, V. V. B., Lee-Lin, S. Q., Touchman, J. W., Bouffard, G. G., Beckstrom-Sternberg, S. M. & Green, E. D., Jan 2003, In : Genome research. 13, 1, p. 55-63 9 p.

Research output: Contribution to journalArticle

Open Access
32 Scopus citations

Transcription-associated mutational asymmetry in mammalian evolution

Green, P., Ewing, B., Miller, W., Thomas, P. J., Thomas, J., Touchman, J., Blakesley, R., Bouffard, G., Beckstrom-Sternberg, S., McDowell, J., Maskeri, B., Smit, A., Haussler, D. & Green, E. D., Apr 1 2003, In : Nature Genetics. 33, 4, p. 514-517 4 p.

Research output: Contribution to journalArticle

199 Scopus citations
2002

Generation and comparative analysis of ∼3.3 Mb of mouse genomic sequence orthologous to the region of human chromosome 7q11.23 implicated in Williams syndrome

DeSilva, U., Elnitski, L., Idol, J. R., Doyle, J. L., Gan, W., Thomas, J. W., Schwartz, S., Dietrich, N. L., Beckstrom-Sternberg, S. M., McDowell, J. C., Blakesley, R. W., Bouffard, G. G., Thomas, P. J., Touchman, J. W., Miller, W. & Green, E. D., Jan 26 2002, In : Genome research. 12, 1, p. 3-15 13 p.

Research output: Contribution to journalReview article

66 Scopus citations
2001

The NIEHS Xenopus maternal EST project: Interim analysis of the first 13,879 ESTs from unfertilized eggs

Blackshear, P. J., Lai, W. S., Thorn, J. M., Kennington, E. A., Staffa, N. G., Moore, D. T., Bouffard, G. G., Beckstrom-Sternberg, S. M., Touchman, J. W., Bonaldo, M. D. F. & Soares, M. B., Apr 4 2001, In : Gene. 267, 1, p. 71-87 17 p.

Research output: Contribution to journalArticle

20 Scopus citations
2000

Comparative genomic sequence analysis of the human and mouse cystic fibrosis transmembrane conductance regulator genes

Ellsworth, R. E., Jamison, D. C., Touchman, J. W., Chissoe, S. L., Braden Maduro, V. V., Bouffard, G. G., Dietrich, N. L., Beckstrom-Sternberg, S. M., Lyer, L. M., Weintraub, L. A., Cotton, M., Courtney, L., Edwards, J., Maupin, R., Ozersky, P., Rohlfing, T., Wohldmann, P., Miner, T., Kemp, K., Kramer, J. & 10 others, Korf, I., Pepin, K., Antonacci-Fulton, L., Fulton, R. S., Minx, P., Hillier, L. D. W., Wilson, R. K., Waterston, R. H., Miller, W. & Green, E. D., Feb 1 2000, In : Proceedings of the National Academy of Sciences of the United States of America. 97, 3, p. 1172-1177 6 p.

Research output: Contribution to journalArticle

54 Scopus citations

The genomic region encompassing the nephropathic cystinosis gene (CTNS): Complete sequencing of a 200-kb segment and discovery of a novel gene within the common cystinosis-causing deletion

Touchman, J. W., Anikster, Y., Dietrich, N. L., Braden Maduro, V. V., McDowell, G., Shotelersuk, V., Bouffard, G. G., Beckstrom-Sternberg, S. M., Gahl, W. A. & Green, E. D., Feb 1 2000, In : Genome research. 10, 2, p. 165-173 9 p.

Research output: Contribution to journalArticle

93 Scopus citations
1991

Gene lineage analysis in populations of Helianthus niveus and H. petiolaris (Asteraceae)

Beckstrom-Sternberg, S. M., Rieseberg, L. H. & Doan, K., Sep 1 1991, In : Plant Systematics and Evolution. 175, 3-4, p. 125-138 14 p.

Research output: Contribution to journalArticle

17 Scopus citations
1990
Open Access
93 Scopus citations
1989
11 Scopus citations