• 30701 Citations
  • 47 h-Index
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Fingerprint Fingerprint is based on mining the text of the experts' scientific documents to create an index of weighted terms, which defines the key subjects of each individual researcher.

Microbiota Medicine & Life Sciences
Ecology Medicine & Life Sciences
microbial communities Agriculture & Biology
rRNA Genes Medicine & Life Sciences
microbial community Earth & Environmental Sciences
Soil Medicine & Life Sciences
Ecosystem Medicine & Life Sciences
bacterial communities Agriculture & Biology

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Research Output 2005 2019

Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development

Pearson, T. R., Caporaso, J. G., Yellowhair, M., Bokulich, N. A., Padi, M., Roe, D. J., Wertheim, B. C., Linhart, M., Martinez, J. A., Bilagody, C., Hornstra, H., Alberts, D. S., Lance, P. & Thompson, P. A., Feb 1 2019, In : Cancer Medicine. 8, 2, p. 617-628 12 p.

Research output: Contribution to journalArticle

Open Access
Ursodeoxycholic Acid
Bile Acids and Salts
Gastrointestinal Microbiome
25 Citations (Scopus)

Best practices for analysing microbiomes

Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R. & 3 othersZhu, Q., Caporaso, J. G. & Dorrestein, P. C., May 23 2018, (Accepted/In press) In : Nature Reviews Microbiology. p. 1-13 13 p.

Research output: Contribution to journalArticle

Practice Guidelines
Research Design
51 Citations (Scopus)

Current understanding of the human microbiome

Gilbert, J. A., Blaser, M. J., Caporaso, J. G., Jansson, J. K., Lynch, S. V. & Knight, R., Apr 10 2018, In : Nature Medicine. 24, 4, p. 392-400 9 p.

Research output: Contribution to journalArticle

Microbial Genome
Gene Expression Profiling
13 Citations (Scopus)

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

Bokulich, N. A., Kaehler, B. D., Rideout, J. R., Dillon, M., Bolyen, E., Knight, R., Huttley, G. A. & Caporaso, J. G., May 17 2018, In : Microbiome. 6, 1, 90.

Research output: Contribution to journalArticle

Machine Learning
4 Citations (Scopus)

Qiita: rapid, web-enabled microbiome meta-analysis

Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., Sanders, J. G., Shorenstein, J., Holste, H., Petrus, S., Robbins-Pianka, A., Brislawn, C. J., Wang, M., Rideout, J. R., Bolyen, E., Dillon, M. & 3 othersCaporaso, J. G., Dorrestein, P. C. & Knight, R., Oct 1 2018, In : Nature Methods. 15, 10, p. 796-798 3 p.

Research output: Contribution to journalArticle

Chemical analysis