• 2468 Citations
  • 25 h-Index
19952019
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Research Output 1995 2019

  • 2468 Citations
  • 25 h-Index
  • 48 Article
  • 1 Chapter
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Article
2019
Bouteloua gracilis
Southwestern United States
genetic structure
genetic variation
cultivar
2018

Genetic analyses of Astragalus sect. Humillimi (Fabaceae) resolve taxonomy and enable effective conservation

Massatti, R., Belus, M. T., Dowlatshahi, S. & Allan, G. J., Oct 1 2018, In : American Journal of Botany. 105, 10, p. 1703-1711 9 p.

Research output: Contribution to journalArticle

Astragalus
Fabaceae
canyon
taxonomy
canyons
8 Citations (Scopus)

Genotypic variation in phenological plasticity: Reciprocal common gardens reveal adaptive responses to warmer springs but not to fall frost

Cooper, H. F., Grady, K. C., Cowan, J. A., Best, R. J., Allan, G. J. & Whitham, T. G., Jan 1 2018, (Accepted/In press) In : Global Change Biology.

Research output: Contribution to journalArticle

Geothermal springs
frost
garden
Plasticity
plasticity
2 Citations (Scopus)

Large effect quantitative trait loci for salicinoid phenolic glycosides in Populus: Implications for gene discovery

Woolbright, S. A., Rehill, B. J., Lindroth, R. L., Difazio, S. P., Martinsen, G. D., Zinkgraf, M. S., Allan, G. J., Keim, P. S. & Whitham, T. G., Jan 1 2018, (Accepted/In press) In : Ecology and Evolution.

Research output: Contribution to journalArticle

Populus
salicortin
glycosides
quantitative trait loci
gene
2017
1 Citation (Scopus)
arthropod communities
hybrid zone
arthropod
biodiversity
phylogenetics
9 Citations (Scopus)

Conserving threatened riparian ecosystems in the American West: Precipitation gradients and river networks drive genetic connectivity and diversity in a foundation riparian tree (Populus angustifolia)

Bothwell, H. M., Cushman, S. A., Woolbright, S. A., Hersch-Green, E. I., Evans, L. M., Whitham, T. G. & Allan, G. J., 2017, (Accepted/In press) In : Molecular Ecology.

Research output: Contribution to journalArticle

Populus angustifolia
Populus
Climate
Rivers
Ecosystem
3 Citations (Scopus)

Local biotic adaptation of trees and shrubs to plant neighbors

Grady, K. C., Wood, T. E., Kolb, T. E., Hersch-Green, E., Shuster, S. M., Gehring, C. A., Hart, S. C., Allan, G. J. & Whitham, T. G., Apr 1 2017, In : Oikos. 126, 4, p. 583-593 11 p.

Research output: Contribution to journalArticle

genotype
shrub
shrubs
Salix exigua
Populus fremontii
2016
20 Citations (Scopus)

Bud phenology and growth are subject to divergent selection across a latitudinal gradient in Populus angustifolia and impact adaptation across the distributional range and associated arthropods

Evans, L. M., Kaluthota, S., Pearce, D. W., Allan, G. J., Floate, K., Rood, S. B. & Whitham, T. G., Jul 1 2016, In : Ecology and Evolution. 6, 13, p. 4565-4581 17 p.

Research output: Contribution to journalArticle

Populus angustifolia
latitudinal gradient
bud
arthropod
phenology
52 Citations (Scopus)

Genetically informed ecological niche models improve climate change predictions

Ikeda, D. H., Max, T. L., Allan, G. J., Lau, M. K., Shuster, S. M. & Whitham, T. G., 2016, (Accepted/In press) In : Global Change Biology.

Research output: Contribution to journalArticle

Climate Change
Ecotype
Climate change
climate change
Genetic Structures
6 Citations (Scopus)
Pemphigus betae
Populus angustifolia
Populus
Herbivory
Pemphigus
9 Citations (Scopus)

Tree genetics strongly affect forest productivity, but intraspecific diversity-productivity relationships do not

Fischer, D. G., Wimp, G. M., Hersch-Green, E., Bangert, R. K., Leroy, C. J., Bailey, J. K., Schweitzer, J. A., Dirks, C., Hart, S. C., Allan, G. J. & Whitham, T. G., 2016, (Accepted/In press) In : Functional Ecology.

Research output: Contribution to journalArticle

genotype
productivity
ecosystems
biodiversity
ecosystem function
2015
Anticlea elegans
Anticlea
Melanthiaceae
vicariance
conservation management
4 Citations (Scopus)

Genetic structure and morphological differentiation of three western North American dwarf mistletoes (Arceuthobium: Viscaceae)

Reif, B. P., Mathiasen, R. L., Kenaley, S. C. & Allan, G. J., 2015, In : Systematic Botany. 40, 1, p. 191-207 17 p.

Research output: Contribution to journalArticle

Phoradendron
Viscaceae
Santalales
Arceuthobium
Mistletoe
10 Citations (Scopus)

Geographical barriers and climate influence demographic history in narrowleaf cottonwoods

Evans, L. M., Allan, G. J., Difazio, S. P., Slavov, G. T., Wilder, J. A., Floate, K. D., Rood, S. B. & Whitham, T. G., Apr 12 2015, In : Heredity. 114, 4, p. 387-396 10 p.

Research output: Contribution to journalArticle

Populus
Climate
Demography
Genetic Structures
Population
2014
36 Citations (Scopus)

Climate relicts and their associated communities as natural ecology and evolution laboratories

Woolbright, S. A., Whitham, T. G., Gehring, C. A., Allan, G. J. & Bailey, J. K., 2014, In : Trends in Ecology and Evolution. 29, 7, p. 406-416 11 p.

Research output: Contribution to journalArticle

Ecology
Climate
ecology
Ecosystem
climate
11 Citations (Scopus)
Salicaceae
Populus
introgression
genetic analysis
hybrid zone
24 Citations (Scopus)

Landscape genetic connectivity in a riparian foundation tree is jointly driven by climatic gradients and river networks

Cushman, S. A., Max, T., Meneses, N., Evans, L. M., Ferrier, S., Honchak, B., Whitham, T. G. & Allan, G. J., 2014, In : Ecological Applications. 24, 5, p. 1000-1014 15 p.

Research output: Contribution to journalArticle

gene flow
connectivity
river
ecosystem
inbreeding
26 Citations (Scopus)

Molecular phylogenetic analysis of Hawaiian Rutaceae (Melicope, Platydesma and Zanthoxylum) and their different colonization patterns

Appelhans, M. S., Wen, J., Wood, K. R., Allan, G. J., Zimmer, E. A. & Wagner, W. L., Mar 2014, In : Botanical Journal of the Linnean Society. 174, 3, p. 425-448 24 p.

Research output: Contribution to journalArticle

Melicope
Zanthoxylum
Rutaceae
colonization
phylogenetics
2013
41 Citations (Scopus)

Conservative leaf economic traits correlate with fast growth of genotypes of a foundation riparian species near the thermal maximum extent of its geographic range

Grady, K. C., Laughlin, D. C., Ferrier, S. M., Kolb, T. E., Hart, S. C., Allan, G. J. & Whitham, T. G., Apr 2013, In : Functional Ecology. 27, 2, p. 428-438 11 p.

Research output: Contribution to journalArticle

Hypsithermal
genotype
Populus fremontii
heat
economics
11 Citations (Scopus)

Herbivore host-associated genetic differentiation depends on the scale of plant genetic variation examined

Evans, L. M., Allan, G. J., Meneses, N., Max, T. L. & Whitham, T. G., 2013, In : Evolutionary Ecology. 27, 1, p. 65-81 17 p.

Research output: Contribution to journalArticle

plant genetics
genetic differentiation
genetic variation
herbivore
herbivores
13 Citations (Scopus)

The proportion of three foundation plant species and their genotypes influence an arthropod community: Restoration implications for the endangered southwestern willow flycatcher

Bangert, R., Ferrier, S. M., Evans, L., Kennedy, K., Grady, K. C., Hersch-Green, E., Allan, G. J. & Whitham, T. G., Jul 2013, In : Restoration Ecology. 21, 4, p. 447-456 10 p.

Research output: Contribution to journalArticle

arthropod communities
arthropod
Populus fremontii
genotype
arthropods
2012
4 Citations (Scopus)

Arthropod community similarity in clonal stands of aspen: A test of the genetic similarity rule

Meneses, N., Bailey, J. K., Allan, G. J., Bangert, R. K., Bowker, M. A., Rehill, B. J., Wimp, G. M., Lindroth, R. L. & Whitham, T. G., Mar 2012, In : Ecoscience. 19, 1, p. 48-58 11 p.

Research output: Contribution to journalArticle

arthropod communities
arthropod
Populus fremontii
arthropods
Populus angustifolia
11 Citations (Scopus)
Populus
conservation plants
hybrid zone
Mites
mite
17 Citations (Scopus)

Unique arthropod communities on different host-plant genotypes results in greater arthropod diversity

Ferrier, S. M., Bangert, R. K., Hersch-Green, E. I., Bailey, J. K., Allan, G. J. & Whitham, T. G., Jun 2012, In : Arthropod-Plant Interactions. 6, 2, p. 187-195 9 p.

Research output: Contribution to journalArticle

Populus fremontii
arthropod communities
arthropod
host plant
arthropods
2011
50 Citations (Scopus)

Castor Bean Organelle genome sequencing and worldwide genetic diversity analysis

Rivarola, M., Foster, J. T., Chan, A. P., Williams, A. L., Rice, D. W., Liu, X., Melake-Berhan, A., Creasy, H. H., Puiu, D., Rosovitz, M. J., Khouri, H. M., Beckstrom-Sternberg, S. M., Allan, G. J., Keim, P. S., Ravel, J. & Rabinowicz, P. D., 2011, In : PLoS One. 6, 7, e21743.

Research output: Contribution to journalArticle

Castor Bean
organelle genome
castor beans
Organelles
Genes
45 Citations (Scopus)
Restoration
genetic variation
warming
Productivity
productivity
9 Citations (Scopus)

Genome scans reveal high levels of gene flow in Hawaiian Pittosporum

Bacon, C. D., Allan, G. J., Zimmer, E. A. & Wagner, W. L., Jun 2011, In : Taxon. 60, 3, p. 733-741 9 p.

Research output: Contribution to journalArticle

Pittosporum
gene flow
genome
Hawaii
Pittosporaceae
8 Citations (Scopus)

Pollinator-mediated gene flow fosters genetic variability in a narrow alpine endemic, Abronia alpina (Nyctaginaceae)

Jabis, M. D., Ayers, T. J. & Allan, G. J., Oct 2011, In : American Journal of Botany. 98, 10, p. 1583-1594 12 p.

Research output: Contribution to journalArticle

Nyctaginaceae
Pollination
Gene Flow
pollinator
pollination
2010
63 Citations (Scopus)

Single nucleotide polymorphisms for assessing genetic diversity in castor bean (Ricinus communis)

Foster, J. T., Allan, G. J., Chan, A. P., Rabinowicz, P. D., Ravel, J., Jackson, P. J. & Keim, P. S., Jan 18 2010, In : BMC Plant Biology. 10, 13.

Research output: Contribution to journalArticle

castor beans
Ricinus communis
single nucleotide polymorphism
genetic variation
population genetics
2009
180 Citations (Scopus)

From genes to ecosystems: A synthesis of the effects of plant genetic factors across levels of organization

Bailey, J. K., Schweitzer, J. A., Úbeda, F., Koricheva, J., LeRoy, C. J., Madritch, M. D., Rehill, B. J., Bangert, R. K., Fischer, D. G., Allan, G. J. & Whitham, T. G., Jun 12 2009, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 364, 1523, p. 1607-1616 10 p.

Research output: Contribution to journalArticle

plant genetics
Ecosystems
Ecosystem
introgression
Genes
104 Citations (Scopus)

Phylogeographic reconstruction of a bacterial species with high levels of lateral gene transfer

Pearson, T. R., Giffard, P., Beckstrom-Sternberg, S. M., Auerbach, R., Hornstra, H., Tuanyok, A., Price, E. P., Glass, M. B., Leadem, B., Beckstrom-Sternberg, J. S., Allan, G. J., Foster, J. T., Wagner, D. M., Okinaka, R. T., Sim, S. H., Pearson, O., Wu, Z., Chang, J., Kaul, R., Hoffmaster, A. R. & 7 others, Brettin, T. S., Robison, R. A., Mayo, M., Gee, J. E., Tan, P., Currie, B. J. & Keim, P. S., Nov 18 2009, In : BMC Biology. 7, 78.

Research output: Contribution to journalArticle

Burkholderia pseudomallei
Gene transfer
Horizontal Gene Transfer
gene transfer
Genes
58 Citations (Scopus)

The Hawaiian Archipelago is a stepping stone for dispersal in the Pacific: An example from the plant genus Melicope (Rutaceae)

Harbaugh, D. T., Wagner, W. L., Allan, G. J. & Zimmer, E. A., Feb 2009, In : Journal of Biogeography. 36, 2, p. 230-241 12 p.

Research output: Contribution to journalArticle

Melicope
Rutaceae
archipelago
Hawaii
colonization
2008
33 Citations (Scopus)

A dense linkage map of hybrid cottonwood (Populus fremontii x P. angustifolia) contributes to long-term ecological research and comparison mapping in a model forest tree

Woolbright, S. A., DiFazio, S. P., Yin, T., Martinsen, G. D., Zhang, X., Allan, G. J., Whitham, T. G. & Keim, P. S., Jan 2008, In : Heredity. 100, 1, p. 59-70 12 p.

Research output: Contribution to journalArticle

Populus angustifolia
Populus fremontii
Populus
forest trees
chromosome mapping
129 Citations (Scopus)

Extending genomics to natural communities and ecosystems

Whitham, T. G., DiFazio, S. P., Schweitzer, J. A., Shuster, S. M., Allan, G. J., Bailey, J. K. & Woolbright, S. A., Apr 25 2008, In : Science. 320, 5875, p. 492-495 4 p.

Research output: Contribution to journalArticle

Genomics
Ecosystem
Plant Genome
Ecology
Nucleotides
63 Citations (Scopus)

Genetic structure of a foundation species: Scaling community phenotypes from the individual to the region

Bangert, R. K., Lonsdorf, E. V., Wimp, G. M., Shuster, S. M., Fischer, D., Schweitzer, J. A., Allan, G. J., Bailey, J. K. & Whitham, T. G., Feb 2008, In : Heredity. 100, 2, p. 121-131 11 p.

Research output: Contribution to journalArticle

Genetic Structures
Arthropods
Phenotype
phenotype
Ecosystem
137 Citations (Scopus)

Genome structure and emerging evidence of an incipient sex chromosome in Populus

Yin, T., DiFazio, S. P., Gunter, L. E., Zhang, X., Sewell, M. M., Woolbright, S. A., Allan, G. J., Kelleher, C. T., Douglas, C. J., Wang, M. & Tuskan, G. A., Mar 2008, In : Genome Research. 18, 3, p. 422-430 9 p.

Research output: Contribution to journalArticle

Populus
Sex Chromosomes
Genome
Haplotypes
Genetic Recombination
45 Citations (Scopus)

Tree hybridization and genotypic variation drive cryptic speciation of a specialist mite herbivore

Evans, L. M., Allan, G. J., Shuster, S. M., Woolbright, S. A. & Whitham, T. G., Dec 2008, In : Evolution. 62, 12, p. 3027-3040 14 p.

Research output: Contribution to journalArticle

Herbivory
Mites
mite
mites
herbivore
71 Citations (Scopus)

Worldwide genotyping of castor bean germplasm (Ricinus communis L.) using AFLPs and SSRs

Allan, G. J., Williams, A., Rabinowicz, P. D., Chan, A. P., Ravel, J. & Keim, P. S., May 2008, In : Genetic Resources and Crop Evolution. 55, 3, p. 365-378 14 p.

Research output: Contribution to journalArticle

Castor Bean
Ricinus
castor beans
Ricinus communis
germplasm
2007
26 Citations (Scopus)

VNTR analysis of selected outbreaks of Burkholderia pseudomallei in Australia

Pearson, T. R., U'Ren, J. M., Schupp, J. M., Allan, G. J., Foster, P. G., Mayo, M. J., Gal, D., Choy, J. L., Daugherty, R. L., Kachur, S., Friedman, C. L. C., Leadem, B., Georgia, S., Hornstra, H., Vogler, A. J., Wagner, D. M., Keim, P. S. & Currie, B. J., Jul 2007, In : Infection, Genetics and Evolution. 7, 4, p. 416-423 8 p.

Research output: Contribution to journalArticle

Burkholderia pseudomallei
Minisatellite Repeats
minisatellite repeats
Disease Outbreaks
phylogenetics
2006
694 Citations (Scopus)

A framework for community and ecosystem genetics: From genes to ecosystems

Whitham, T. G., Bailey, J. K., Schweitzer, J. A., Shuster, S. M., Bangert, R. K., Leroy, C. J., Lonsdorf, E. V., Allan, G. J., DiFazio, S. P., Potts, B. M., Fischer, D. G., Gehring, C. A., Lindroth, R. L., Marks, J. C., Hart, S. C., Wimp, G. M. & Wooley, S. C., Jul 2006, In : Nature Reviews Genetics. 7, 7, p. 510-523 14 p.

Research output: Contribution to journalArticle

Ecosystem
ecosystems
Genes
genes
Genetically Modified Organisms
92 Citations (Scopus)

A genetic similarity rule determines arthropod community structure

Bangert, R. K., Turek, R. J., Rehill, B., Wimp, G. M., Schweitzer, J. A., Allan, G. J., Bailey, J. K., Martinsen, G. D., Keim, P. S., Lindroth, R. L. & Whitham, T. G., Apr 2006, In : Molecular Ecology. 15, 5, p. 1379-1391 13 p.

Research output: Contribution to journalArticle

arthropod communities
Arthropods
arthropod
community structure
Chemical analysis
49 Citations (Scopus)

From genes to geography: A genetic similarity rule for arthropod community structure at multiple geographic scales

Bangert, R. K., Allan, G. J., Turek, R. J., Wimp, G. M., Meneses, N., Martinsen, G. D., Keim, P. S. & Whitham, T. G., 2006, In : Molecular Ecology. 15, 13, p. 4215-4228 14 p.

Research output: Contribution to journalArticle

Populus
arthropod communities
Geography
Arthropods
geography
2005
8 Citations (Scopus)

"All effects of a gene on the world": Extended phenotypes, feedbacks, and multi-level selection

Whitham, T. G., Lonsdorf, E., Schweitzer, J. A., Bailey, J. K., Fischer, D. G., Shuster, S. M., Lindroth, R. L., Hart, S. C., Allan, G. J., Gehring, C. A., Keim, P. S., Potts, B. M., Marks, J. C., Rehill, B. J., DiFazio, S. P., LeRoy, C. J., Wimp, G. M. & Woolbright, S., 2005, In : Ecoscience. 12, 1, p. 5-7 3 p.

Research output: Contribution to journalArticle

phenotype
gene
genes
effect
world
2004
80 Citations (Scopus)

Molecular phylogenetic evidence for the geographic origin and classification of Canary Island Lotus (Fabaceae: Loteae)

Allan, G. J., Francisco-Ortega, J., Santos-Guerra, A., Boerner, E. & Zimmer, E. A., Jul 2004, In : Molecular Phylogenetics and Evolution. 32, 1, p. 123-138 16 p.

Research output: Contribution to journalArticle

Lotus
Azores
Canary Islands
Fabaceae
Spain
2002
59 Citations (Scopus)

Evolution of insular pacific Pittosporum (Pittosporaceae): Origin of the hawaiian radiation

Gemmill, C. E. C., Allan, G. J., Wagner, W. L. & Zimmer, E. A., 2002, In : Molecular Phylogenetics and Evolution. 22, 1, p. 31-42 12 p.

Research output: Contribution to journalArticle

Rosales
Pittosporaceae
Pittosporum
New Zealand
Radiation
2000
66 Citations (Scopus)
Faboideae
Lotus
Fabaceae
phylogenetics
Coronilla
1997
29 Citations (Scopus)

Distribution of parental DNA markers in Encelia virginensis (Asteraceae: Heliantheae), a diploid species of putative hybrid origin

Allan, G. J., Clark, C. & Rieseberg, L. H., 1997, In : Plant Systematics and Evolution. 205, 3-4, p. 205-221 17 p.

Research output: Contribution to journalArticle

Encelia
Asteraceae
diploidy
DNA
genetic markers
1995
40 Citations (Scopus)

Genetic analysis of the endangered island endemic Malacothamnus fasciculatus (Nutt.) Greene var. nesioticus (Rob.) Kearn. (Malvaceae)

Swensen, S. M., Allan, G. J., Howe, M., Elisens, W. J., Junak, S. A. & Rieseberg, L. H., 1995, In : Conservation Biology. 9, 2, p. 404-415 12 p.

Research output: Contribution to journalArticle

Malvaceae
genetic analysis
genetic techniques and protocols