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  • Review article

    Best practices for analysing microbiomes

    Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R. & 3 others, Zhu, Q., Caporaso, J. G. & Dorrestein, P. C., Jul 1 2018, In: Nature Reviews Microbiology. 16, 7, p. 410-422 13 p.

    Research output: Contribution to journalReview articlepeer-review

    515 Scopus citations
  • Conducting a microbiome study

    Goodrich, J. K., Di Rienzi, S. C., Poole, A. C., Koren, O., Walters, W. A., Caporaso, J. G., Knight, R. & Ley, R. E., Jul 17 2014, In: Cell. 158, 2, p. 250-262 13 p.

    Research output: Contribution to journalReview articlepeer-review

    381 Scopus citations
  • Cyber-eco technology: Engineering of ecological systems

    Flikkema, P. G., 2013, In: Proceedings of the IEEE. 101, 5, p. 1031-1033 3 p., 6504492.

    Research output: Contribution to journalReview articlepeer-review

    1 Scopus citations
  • Designing inclusive HPV cancer vaccines and increasing uptake among native americans—A cultural perspective review

    Bordeaux, S. J., Baca, A. W., Begay, R. L., Gachupin, F. C., Gregory Caporaso, J., Herbst-Kralovetz, M. M. & Lee, N. R., Oct 2021, In: Current Oncology. 28, 5, p. 3705-3716 12 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
  • Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins

    Stone, N. E., Nunnally, A. E., Jimenez, V., Cope, E. K., Sahl, J. W., Sheridan, K., Hornstra, H. M., Vinocur, J., Settles, E. W., Headley, K. C., Williamson, C. H. D., Rideout, J. R., Bolyen, E., Caporaso, J. G., Terriquez, J., Monroy, F. P., Busch, J. D., Keim, P. & Wagner, D. M., Aug 2019, In: Anaerobe. 58, p. 53-72 20 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    12 Scopus citations
  • Geography and location are the primary drivers of office microbiome composition

    Chase, J., Fouquier, J., Zare, M., Sonderegger, D. L., Knight, R., Kelley, S. T., Siegel, J. & Caporaso, J. G., Mar 1 2016, In: mSystems. 1, 2, e00022-16.

    Research output: Contribution to journalReview articlepeer-review

    80 Scopus citations
  • Human gut microbiome viewed across age and geography

    Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., Heath, A. C., Warner, B., Reeder, J., Kuczynski, J., Caporaso, J. G., Lozupone, C. A., Lauber, C., Clemente, J. C., Knights, D., Knight, R. & 1 others, Gordon, J. I., Jun 14 2012, In: Nature. 486, 7402, p. 222-227 6 p.

    Research output: Contribution to journalReview articlepeer-review

    4087 Scopus citations
  • Sequencing our way towards understanding global eukaryotic biodiversity

    Bik, H. M., Porazinska, D. L., Creer, S., Caporaso, J. G., Knight, R. & Thomas, W. K., Apr 2012, In: Trends in Ecology and Evolution. 27, 4, p. 233-243 11 p.

    Research output: Contribution to journalReview articlepeer-review

    289 Scopus citations
  • The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

    Xavier, J. B., Young, V. B., Skufca, J., Ginty, F., Testerman, T., Pearson, A. T., Macklin, P., Mitchell, A., Shmulevich, I., Xie, L., Caporaso, J. G., Crandall, K. A., Simone, N. L., Godoy-Vitorino, F., Griffin, T. J., Whiteson, K. L., Gustafson, H. H., Slade, D. J., Schmidt, T. M., Walther-Antonio, M. R. S. & 10 others, Korem, T., Webb-Robertson, B. J. M., Styczynski, M. P., Johnson, W. E., Jobin, C., Ridlon, J. M., Koh, A. Y., Yu, M., Kelly, L. & Wargo, J. A., Mar 2020, In: Trends in Cancer. 6, 3, p. 192-204 13 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    53 Scopus citations