Research Output

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Review article
2020

The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

Xavier, J. B., Young, V. B., Skufca, J., Ginty, F., Testerman, T., Pearson, A. T., Macklin, P., Mitchell, A., Shmulevich, I., Xie, L., Caporaso, J. G., Crandall, K. A., Simone, N. L., Godoy-Vitorino, F., Griffin, T. J., Whiteson, K. L., Gustafson, H. H., Slade, D. J., Schmidt, T. M., Walther-Antonio, M. R. S. & 10 others, Korem, T., Webb-Robertson, B. J. M., Styczynski, M. P., Johnson, W. E., Jobin, C., Ridlon, J. M., Koh, A. Y., Yu, M., Kelly, L. & Wargo, J. A., Mar 2020, In : Trends in Cancer. 6, 3, p. 192-204 13 p.

Research output: Contribution to journalReview article

Open Access
2019

Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins

Stone, N. E., Nunnally, A. E., Jimenez, V., Cope, E. K., Sahl, J. W., Sheridan, K., Hornstra, H. M., Vinocur, J., Settles, E. W., Headley, K. C., Williamson, C. H. D., Rideout, J. R., Bolyen, E., Caporaso, J. G., Terriquez, J., Monroy, F. P., Busch, J. D., Keim, P. S. & Wagner, D. M., Jan 1 2019, In : Anaerobe.

Research output: Contribution to journalReview article

Open Access
4 Scopus citations
2018

Best practices for analysing microbiomes

Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R. & 3 others, Zhu, Q., Caporaso, J. G. & Dorrestein, P. C., Jul 1 2018, In : Nature Reviews Microbiology. 16, 7, p. 410-422 13 p.

Research output: Contribution to journalReview article

185 Scopus citations
2016

Geography and location are the primary drivers of office microbiome composition

Chase, J., Fouquier, J., Zare, M., Sonderegger, D. L., Knight, R., Kelley, S. T., Siegel, J. & Caporaso, J. G., Mar 1 2016, In : mSystems. 1, 2, e00022-16.

Research output: Contribution to journalReview article

46 Scopus citations
2014

Conducting a microbiome study

Goodrich, J. K., Di Rienzi, S. C., Poole, A. C., Koren, O., Walters, W. A., Caporaso, J. G., Knight, R. & Ley, R. E., Jul 17 2014, In : Cell. 158, 2, p. 250-262 13 p.

Research output: Contribution to journalReview article

252 Scopus citations
2013

Cyber-eco technology: Engineering of ecological systems

Flikkema, P. G., Jan 1 2013, In : Proceedings of the IEEE. 101, 5, p. 1031-1033 3 p., 6504492.

Research output: Contribution to journalReview article

1 Scopus citations
2012

Human gut microbiome viewed across age and geography

Yatsunenko, T., Rey, F. E., Manary, M. J., Trehan, I., Dominguez-Bello, M. G., Contreras, M., Magris, M., Hidalgo, G., Baldassano, R. N., Anokhin, A. P., Heath, A. C., Warner, B., Reeder, J., Kuczynski, J., Caporaso, J. G., Lozupone, C. A., Lauber, C., Clemente, J. C., Knights, D., Knight, R. & 1 others, Gordon, J. I., Jun 14 2012, In : Nature. 486, 7402, p. 222-227 6 p.

Research output: Contribution to journalReview article

3068 Scopus citations

Sequencing our way towards understanding global eukaryotic biodiversity

Bik, H. M., Porazinska, D. L., Creer, S., Caporaso, J. G., Knight, R. & Thomas, W. K., Apr 1 2012, In : Trends in Ecology and Evolution. 27, 4, p. 233-243 11 p.

Research output: Contribution to journalReview article

248 Scopus citations