Electrical Engineering and Computer Science

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  • 2019

    Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)

    Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In: Nature Biotechnology. 37, 9, p. 1091 1 p.

    Research output: Contribution to journalComment/debatepeer-review

    Open Access
    79 Scopus citations
  • 2016

    A Step Forward to Empower Global Microbiome Research Through Local Leadership

    The Working Group Supporting the INCT Microbiome, Oct 1 2016, In: Trends in Microbiology. 24, 10, p. 767-771 5 p.

    Research output: Contribution to journalComment/debatepeer-review

    Open Access
    7 Scopus citations
  • 2014

    Advancing the microbiome research community

    Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J. & White, O., Oct 9 2014, In: Cell. 159, 2, p. 227-230 4 p.

    Research output: Contribution to journalComment/debatepeer-review

    42 Scopus citations
  • 2013

    Collaborative cloud-enabled tools allow rapid, reproducible biological insights

    Ragan-Kelley, B., Walters, W. A., McDonald, D., Riley, J., Granger, B. E., Gonzalez, A., Knight, R., Perez, F. & Caporaso, J. G., Mar 2013, In: ISME Journal. 7, 3, p. 461-464 4 p.

    Research output: Contribution to journalComment/debatepeer-review

    16 Scopus citations
  • 2012

    Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

    Werner, J. J., Zhou, D., Caporaso, J. G., Knight, R. & Angenent, L. T., Jul 2012, In: ISME Journal. 6, 7, p. 1273-1276 4 p.

    Research output: Contribution to journalComment/debatepeer-review

    77 Scopus citations
  • The Biological Observation Matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome

    McDonald, D., Clemente, J. C., Kuczynski, J., Rideout, J. R., Stombaugh, J., Wendel, D., Wilke, A., Huse, S., Hufnagle, J., Meyer, F., Knight, R. & Caporaso, J. G., Jul 12 2012, In: GigaScience. 464, 1, 7.

    Research output: Contribution to journalComment/debatepeer-review

    437 Scopus citations