Research Output

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Comment/debate
2019

Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)

Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In : Nature Biotechnology. 37, 9, 1 p.

Research output: Contribution to journalComment/debate

Open Access
2 Scopus citations
2016

A Step Forward to Empower Global Microbiome Research Through Local Leadership

The Working Group Supporting the INCT Microbiome, Oct 1 2016, In : Trends in Microbiology. 24, 10, p. 767-771 5 p.

Research output: Contribution to journalComment/debate

Open Access
5 Scopus citations
2014

Advancing the microbiome research community

Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J. & White, O., Oct 9 2014, In : Cell. 159, 2, p. 227-230 4 p.

Research output: Contribution to journalComment/debate

35 Scopus citations
2013

Collaborative cloud-enabled tools allow rapid, reproducible biological insights

Ragan-Kelley, B., Walters, W. A., McDonald, D., Riley, J., Granger, B. E., Gonzalez, A., Knight, R., Perez, F. & Caporaso, J. G., Mar 1 2013, In : ISME Journal. 7, 3, p. 461-464 4 p.

Research output: Contribution to journalComment/debate

16 Scopus citations
2012

Comparison of Illumina paired-end and single-direction sequencing for microbial 16S rRNA gene amplicon surveys

Werner, J. J., Zhou, D., Caporaso, J. G., Knight, R. & Angenent, L. T., Jul 1 2012, In : ISME Journal. 6, 7, p. 1273-1276 4 p.

Research output: Contribution to journalComment/debate

67 Scopus citations

The Biological Observation Matrix (BIOM) format or: How I learned to stop worrying and love the ome-ome

McDonald, D., Clemente, J. C., Kuczynski, J., Rideout, J. R., Stombaugh, J., Wendel, D., Wilke, A., Huse, S., Hufnagle, J., Meyer, F., Knight, R. & Caporaso, J. G., Jul 12 2012, In : GigaScience. 464, 1, 7.

Research output: Contribution to journalComment/debate

296 Scopus citations