Electrical Engineering and Computer Science

Research Output 1991 2019

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2019
3 Citations (Scopus)

Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development

Pearson, T. R., Caporaso, J. G., Yellowhair, M., Bokulich, N. A., Padi, M., Roe, D. J., Wertheim, B. C., Linhart, M., Martinez, J. A., Bilagody, C., Hornstra, H., Alberts, D. S., Lance, P. & Thompson, P. A., Feb 1 2019, In : Cancer Medicine. 8, 2, p. 617-628 12 p.

Research output: Contribution to journal › Article

Open Access
Ursodeoxycholic Acid
Adenoma
Microbiota
Bile Acids and Salts
Gastrointestinal Microbiome
16 Citations (Scopus)

Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota

Kang, D. W., Adams, J. B., Coleman, D. M., Pollard, E. L., Maldonado, J., McDonough-Means, S., Caporaso, J. G. & Krajmalnik-Brown, R., Dec 1 2019, In : Scientific Reports. 9, 1, 5821.

Research output: Contribution to journal › Article

Open Access
Microbiota
Autistic Disorder
Therapeutics
Prevotella
Behavioral Symptoms

Rapidly processed stool swabs approximate stool microbiota profiles

Bokulich, N. A., Maldonado, J., Kang, D. W., Krajmalnik-Brown, R. & Caporaso, J. G., Mar 1 2019, In : mSphere. 4, 2, e00208-19.

Research output: Contribution to journal › Article

Open Access
Microbiota
Temperature
Enterobacteriaceae
rRNA Genes
Gastrointestinal Microbiome

Species abundance information improves sequence taxonomy classification accuracy

Kaehler, B. D., Bokulich, N. A., McDonald, D., Knight, R., Caporaso, J. G. & Huttley, G. A., Dec 1 2019, In : Nature Communications. 10, 1, 4643.

Research output: Contribution to journal › Article

Open Access
taxonomy
Taxonomies
Classifiers
classifiers
Databases

UAV wildlife radiotelemetry: System and methods of localization

Shafer, M. W., Vega, G., Rothfus, K. & Flikkema, P. G., Jan 1 2019, (Accepted/In press) In : Methods in Ecology and Evolution.

Research output: Contribution to journal › Article

radiotelemetry
radio telemetry
wildlife
flight
bat
2018
112 Citations (Scopus)

Best practices for analysing microbiomes

Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R. & 3 others, Zhu, Q., Caporaso, J. G. & Dorrestein, P. C., May 23 2018, (Accepted/In press) In : Nature Reviews Microbiology. p. 1-13 13 p.

Research output: Contribution to journal › Article

Microbiota
Practice Guidelines
Research Design
Technology
Metagenomics
1 Citation (Scopus)

Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: Report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

Meisel, J. S., Nasko, D. J., Brubach, B., Cepeda-Espinoza, V., Chopyk, J., Corrada-Bravo, H., Fedarko, M., Ghurye, J., Javkar, K., Olson, N. D., Shah, N., Allard, S. M., Bazinet, A. L., Bergman, N. H., Brown, A., Caporaso, J. G., Conlan, S., Diruggiero, J., Forry, S. P., Hasan, N. A. & 16 others, Kralj, J., Luethy, P. M., Milton, D. K., Ondov, B. D., Preheim, S., Ratnayake, S., Rogers, S. M., Rosovitz, M. J., Sakowski, E. G., Schliebs, N. O., Sommer, D. D., Ternus, K. L., Uritskiy, G., Zhang, S. X., Pop, M. & Treangen, T. J., Nov 5 2018, In : Microbiome. 6, 1, 197.

Research output: Contribution to journal › Article

Open Access
Microbiota
Computational Biology
Metagenomics
Communicable Diseases
Information Dissemination
156 Citations (Scopus)

Current understanding of the human microbiome

Gilbert, J. A., Blaser, M. J., Caporaso, J. G., Jansson, J. K., Lynch, S. V. & Knight, R., Apr 10 2018, In : Nature Medicine. 24, 4, p. 392-400 9 p.

Research output: Contribution to journal › Article

Microbiota
Microbial Genome
Aptitude
Metabolome
Gene Expression Profiling
3 Citations (Scopus)

Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017

Sinha, R., Ahsan, H., Blaser, M., Caporaso, J. G., Carmical, J. R., Chan, A. T., Fodor, A., Gail, M. H., Harris, C. C., Helzlsouer, K., Huttenhower, C., Knight, R., Kong, H. H., Lai, G. Y., Hutchinson, D. L. S., Le Marchand, L., Li, H., Orlich, M. J., Shi, J., Truelove, A. & 7 others, Verma, M., Vogtmann, E., White, O., Willett, W., Zheng, W., Mahabir, S. & Abnet, C., Nov 26 2018, In : Microbiome. 6, 1, 210.

Research output: Contribution to journal › Article

Open Access
Microbiota
Prospective Studies
Education
Health
National Cancer Institute (U.S.)
97 Citations (Scopus)

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

Bokulich, N. A., Kaehler, B. D., Rideout, J. R., Dillon, M., Bolyen, E., Knight, R., Huttley, G. A. & Caporaso, J. G., May 17 2018, In : Microbiome. 6, 1, 90.

Research output: Contribution to journal › Article

Genes
Taxes
Benchmarking
Microbiota
Machine Learning
37 Citations (Scopus)

Qiita: rapid, web-enabled microbiome meta-analysis

Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., Sanders, J. G., Shorenstein, J., Holste, H., Petrus, S., Robbins-Pianka, A., Brislawn, C. J., Wang, M., Rideout, J. R., Bolyen, E., Dillon, M. & 3 others, Caporaso, J. G., Dorrestein, P. C. & Knight, R., Oct 1 2018, In : Nature Methods. 15, 10, p. 796-798 3 p.

Research output: Contribution to journal › Article

Microbiota
Meta-Analysis
Chemical analysis
53 Citations (Scopus)

Species-level functional profiling of metagenomes and metatranscriptomes

Franzosa, E. A., McIver, L. J., Rahnavard, G., Thompson, L. R., Schirmer, M., Weingart, G., Lipson, K. S., Knight, R., Caporaso, J. G., Segata, N. & Huttenhower, C., Nov 1 2018, In : Nature Methods. 15, 11, p. 962-968 7 p.

Research output: Contribution to journal › Article

Metagenome
Genes
Metagenomics
Microbiota
Metabolism
2017
220 Citations (Scopus)

Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study

Kang, D. W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E. L., Roux, S., Sadowsky, M. J., Lipson, K. S., Sullivan, M. B., Caporaso, J. G. & Krajmalnik-Brown, R., 2017, In : Microbiome. 5, 1, 10.

Research output: Contribution to journal › Article

Microbiota
Autistic Disorder
Ecosystem
Therapeutics
Autism Spectrum Disorder
8 Citations (Scopus)

Multi-omics analysis of periodontal pocket microbial communities pre- and posttreatment

Califf, K. J., Schwarzberg-Lipson, K., Garg, N., Gibbons, S. M., Caporaso, J. G., Slots, J., Cohen, C., Dorrestein, P. C. & Kelley, S. T., May 1 2017, In : mSystems. 2, 3, e00016.

Research output: Contribution to journal › Article

Periodontal Pocket
Metagenomics
Firearms
Metabolites
microbial communities
18 Citations (Scopus)

Significant impacts of increasing aridity on the arid soil microbiome

Neilson, J. W., Califf, K., Cardona, C., Copeland, A., Van Treuren, W., Josephson, K. L., Knight, R., Gilbert, J. A., Quade, J., Caporaso, J. G. & Maier, R. M., May 1 2017, In : mSystems. 2, 3, e00195.

Research output: Contribution to journal › Article

arid soils
Microbiota
dry environmental conditions
aridity
Soil
2016
68 Citations (Scopus)

Accurate estimation of fungal diversity and abundance through improved lineage-specific primers optimized for Illumina amplicon sequencing

Taylor, D. L., Walters, W. A., Lennon, N. J., Bochicchio, J., Krohn, A., Caporaso, J. G. & Pennanen, T., 2016, In : Applied and Environmental Microbiology. 82, 24, p. 7217-7226 10 p.

Research output: Contribution to journal › Article

Soil
soil sampling
ribosomal RNA
gene dosage
Large Ribosome Subunits
4 Citations (Scopus)

cual-id: Globally Unique, Correctable, and Human-Friendly Sample Identifiers for Comparative Omics Studies

Chase, J. H., Bolyen, E., Rideout, J. R. & Caporaso, J. G., Jan 1 2016, In : mSystems. 1, 1, e00010-15.

Research output: Contribution to journal › Article

Transcription
comparative study
Metadata
Mints
Mentha
6 Citations (Scopus)

Ghost-tree: Creating hybrid-gene phylogenetic trees for diversity analyses

Fouquier, J., Rideout, J. R., Bolyen, E., Chase, J., Shiffer, A., McDonald, D., Knight, R., Caporaso, J. G. & Kelley, S. T., 2016, In : Microbiome. 4, 11.

Research output: Contribution to journal › Article

Phylogeny
Genes
Genetic Markers
Aptitude
Fungi
197 Citations (Scopus)

Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys

Walters, W., Hyde, E. R., Berg-Lyons, D., Ackermann, G., Humphrey, G., Parada, A., Gilbert, J. A., Jansson, J. K., Caporaso, J. G., Fuhrman, J. A., Apprill, A. & Knight, R., Jan 1 2016, In : mSystems. 1, 1, e00009-15.

Research output: Contribution to journal › Article

Microbial Genes
Microbiota
rRNA Genes
internal transcribed spacers
microbial communities
3 Citations (Scopus)

Keemei: Cloud-based validation of tabular bioinformatics file formats in Google Sheets

Rideout, J. R., Chase, J. H., Bolyen, E., Ackermann, G., González, A., Knight, R. & Caporaso, J. G., 2016, In : GigaScience. 5, 1, 27.

Research output: Contribution to journal › Article

Bioinformatics
Computational Biology
Spreadsheets
Research Personnel
Information Storage and Retrieval
45 Citations (Scopus)

Metagenomics reveals dysbiosis and a potentially pathogenic N. flavescens strain in duodenum of adult celiac patients

D'Argenio, V., Casaburi, G., Precone, V., Pagliuca, C., Colicchio, R., Sarnataro, D., Discepolo, V., Kim, S. M., Russo, I., Del Vecchio Blanco, G., Horner, D. S., Chiara, M., Pesole, G., Salvatore, P., Monteleone, G., Ciacci, C., Caporaso, J. G., Jabrì, B., Salvatore, F. & Sacchetti, L., Jun 1 2016, In : American Journal of Gastroenterology. 111, 6, p. 879-890 12 p.

Research output: Contribution to journal › Article

Dysbiosis
Metagenomics
Celiac Disease
Duodenum
Abdomen
23 Citations (Scopus)

Mockrobiota: A public resource for microbiome bioinformatics benchmarking

Bokulich, N. A., Rideout, J. R., Mercurio, W. G., Shiffer, A., Wolfe, B., Maurice, C. F., Dutton, R. J., Turnbaugh, P. J., Knight, R. & Caporaso, J. G., Sep 1 2016, In : mSystems. 1, 5, e00062.

Research output: Contribution to journal › Article

Benchmarking
bioinformatics
benchmarking
Microbiota
Bioinformatics
67 Citations (Scopus)

Open-Source Sequence Clustering Methods Improve the State Of the Art

Kopylova, E., Navas-Molina, J. A., Mercier, C., Xu, Z. Z., Mahé, F., He, Y., Zhou, H. W., Rognes, T., Caporaso, J. G. & Knight, R., Jan 1 2016, In : mSystems. 1, 1, e00003-15.

Research output: Contribution to journal › Article

Clustering Methods
Clustering algorithms
Open Source
Cluster Analysis
Sequencing
35 Citations (Scopus)

Phylogenetic organization of bacterial activity

Morrissey, E. M., Mau, R. L., Schwartz, E., Caporaso, J. G., Dijkstra, P., van Gestel, N., Koch, B. J., Liu, C. M., Hayer, M., McHugh, T. A., Marks, J. C., Price, L. B. & Hungate, B. A., Mar 4 2016, (Accepted/In press) In : ISME Journal.

Research output: Contribution to journal › Article

Phylogeny
microbial activity
Ecosystem
phylogeny
Bacteria
15 Citations (Scopus)

Reduced epithelial Na+/H+exchange drives gut microbial dysbiosis and promotes inflammatory response in T cell-mediated murine colitis

Laubitz, D., Harrison, C. A., Midura-Kiela, M. T., Ramalingam, R., Larmonier, C. B., Chase, J. H., Caporaso, J. G., Besselsen, D. G., Ghishan, F. K. & Kiela, P. R., Apr 1 2016, In : PLoS One. 11, 4, e0152044.

Research output: Contribution to journal › Article

Dysbiosis
T-cells
colitis
Colitis
intestinal microorganisms
2015
11 Citations (Scopus)

A state-space modeling approach to estimating canopy conductance and associated uncertainties from sap flux density data

Bell, D. M., Ward, E. J., Oishi, A. C., Oren, R., Flikkema, P. G. & Clark, J. S., Jun 1 2015, In : Tree Physiology. 35, 7, p. 792-802 11 p.

Research output: Contribution to journal › Article

sap
Uncertainty
uncertainty
canopy
Soil
20 Citations (Scopus)

Automated Fault Location and Isolation in Distribution Grids with Distributed Control and Unreliable Communication

Kashyap, N., Yang, C. W., Sierla, S. & Flikkema, P. G., 2015, In : IEEE Transactions on Industrial Electronics. 62, 4, p. 2612-2619 8 p., 7000540.

Research output: Contribution to journal › Article

Electric fault location
Automation
Communication
Telecommunication networks
Intelligent agents
67 Citations (Scopus)

Dietary input of microbes and host genetic variation shape among-population differences in stickleback gut microbiota

Smith, C. C. R., Snowberg, L. K., Caporaso, J. G., Knight, R. & Bolnick, D. I., Nov 1 2015, In : ISME Journal. 9, 11, p. 2515-2526 12 p.

Research output: Contribution to journal › Article

Smegmamorpha
Gasterosteidae
intestinal microorganisms
genetic variation
genotype
57 Citations (Scopus)

Fiber supplementation influences phylogenetic structure and functional capacity of the human intestinal microbiome: Follow-up of a randomized controlled trial

Holscher, H. D., Caporaso, J. G., Hooda, S., Brulc, J. M., Fahey, G. C. & Swanson, K. S., Jan 1 2015, In : American Journal of Clinical Nutrition. 101, 1, p. 55-64 10 p.

Research output: Contribution to journal › Article

polydextrose
Microbiota
Bacteroidetes
Bacterial Genes
Firearms
36 Citations (Scopus)

From rare to dominant: A fine-tuned soil bacterial bloom during petroleum hydrocarbon bioremediation

Fuentes, S., Barra, B., Caporaso, J. G. & Seeger, M., 2015, In : Applied and Environmental Microbiology. 82, 3, p. 888-896 9 p.

Research output: Contribution to journal › Article

Environmental Biodegradation
bioremediation
Petroleum
petroleum hydrocarbon
Hydrocarbons
16 Citations (Scopus)

Genomic Standards Consortium Projects

Field, D., Sterk, P., Kottmann, R., Smet, J. W., Amaral-Zettler, L., Cochrane, G., Cole, J. R., Davies, N., Dawyndt, P., Garrity, G. M., Gilbert, J. A., Glöckner, F. O., Hirschman, L., Klenk, H. P., Knight, R., Kyrpides, N., Meyer, F., Karsch-Mizrachi, I., Morrison, N., Robbins, R. & 9 others, Gil, I. S., Sansone, S., Schriml, L., Tatusova, T., Ussery, D., Yilmaz, P., White, O., Wooley, J. & Caporaso, J. G., Oct 30 2015, (Accepted/In press) In : Standards in Genomic Sciences.

Research output: Contribution to journal › Article

Genomics
22 Citations (Scopus)

Gut microbial and short-chain fatty acid profiles in adults with chronic constipation before and after treatment with lubiprostone

Kang, D. W., DiBaise, J. K., Ilhan, Z. E., Crowell, M. D., Rideout, J. R., Caporaso, J. G., Rittmann, B. E. & Krajmalnik-Brown, R., Jun 1 2015, In : Anaerobe. 33, p. 33-41 9 p.

Research output: Contribution to journal › Article

Volatile Fatty Acids
Constipation
Butyrates
Healthy Volunteers
Therapeutics
62 Citations (Scopus)

Quantitative microbial ecology through stable isotope probing

Hungate, B. A., Mau, R. L., Schwartz, E., Caporaso, J. G., Dijkstra, P., van Gestel, N., Koch, B. J., Liu, C. M., McHugh, T. A., Marks, J. C., Morrissey, E. M. & Price, L. B., 2015, In : Applied and Environmental Microbiology. 81, 21, p. 7570-7581 12 p.

Research output: Contribution to journal › Article

microbial ecology
Ecology
Isotopes
stable isotopes
stable isotope
44 Citations (Scopus)

The role of curcumin in modulating colonic microbiota during colitis and colon cancer prevention

Mcfadden, R. M. T., Larmonier, C. B., Shehab, K. W., Midura-Kiela, M., Ramalingam, R., Harrison, C. A., Besselsen, D. G., Chase, J. H., Caporaso, J. G., Jobin, C., Ghishan, F. K. & Kiela, P. R., Jul 25 2015, In : Inflammatory Bowel Diseases. 21, 11, p. 2483-2494 12 p.

Research output: Contribution to journal › Article

Curcumin
Microbiota
Colitis
Colonic Neoplasms
Interleukin-10
2014
34 Citations (Scopus)

Advancing the microbiome research community

Huttenhower, C., Knight, R., Brown, C. T., Caporaso, J. G., Clemente, J. C., Gevers, D., Franzosa, E. A., Kelley, S. T., Knights, D., Ley, R. E., Mahurkar, A., Ravel, J. & White, O., Oct 9 2014, In : Cell. 159, 2, p. 227-230 4 p.

Research output: Contribution to journal › Article

Microbiota
Policy Making
Research
Standardization
Health
4 Citations (Scopus)

A hybrid DNA extraction method for the qualitative and quantitative assessment of bacterial communities from poultry production samples

Rothrock, M. J., Hiett, K. L., Gamble, J., Caudill, A. C., Cicconi-Hogan, K. M. & Caporaso, J. G., 2014, In : Journal of visualized experiments : JoVE. 94

Research output: Contribution to journal › Article

Poultry
DNA
Metagenomics
Robotics
Processing
176 Citations (Scopus)

Conditionally rare taxa disproportionately contribute to temporal changes in microbial diversity

Shade, A., Jones, S. E., Caporaso, J. G., Handelsman, J., Knight, R., Fierer, N. & Gilbert, J. A., Jul 15 2014, In : mBio. 5, 4, e01371-14.

Research output: Contribution to journal › Article

Ecosystem
Lakes
Waste Water
Ecology
Tongue
215 Citations (Scopus)

Conducting a microbiome study

Goodrich, J. K., Di Rienzi, S. C., Poole, A. C., Koren, O., Walters, W. A., Caporaso, J. G., Knight, R. & Ley, R. E., Jul 17 2014, In : Cell. 158, 2, p. 250-262 13 p.

Research output: Contribution to journal › Article

Microbiota
Research Personnel
Research
Life Style
192 Citations (Scopus)

Individual diet has sex-dependent effects on vertebrate gut microbiota

Bolnick, D. I., Snowberg, L. K., Hirsch, P. E., Lauber, C. L., Org, E., Parks, B., Lusis, A. J., Knight, R., Caporaso, J. G. & Svanbäck, R., Jul 29 2014, In : Nature Communications. 5, 4500.

Research output: Contribution to journal › Article

diets
vertebrates
Nutrition
Vertebrates
Diet
91 Citations (Scopus)

Individuals' diet diversity influences gut microbial diversity in two freshwater fish (threespine stickleback and Eurasian perch)

Bolnick, D. I., Snowberg, L. K., Hirsch, P. E., Lauber, C. L., Knight, R., Caporaso, J. G. & Svanbäck, R., 2014, In : Ecology Letters. 17, 8, p. 979-987 9 p.

Research output: Contribution to journal › Article

Perca fluviatilis
Gasterosteus aculeatus
intestinal microorganisms
freshwater fish
diet
64 Citations (Scopus)

Major Histocompatibility Complex class IIb polymorphism influences gut microbiota composition and diversity

Bolnick, D. I., Snowberg, L. K., Caporaso, J. G., Lauber, C., Knight, R. & Stutz, W. E., Oct 1 2014, In : Molecular Ecology. 23, 19, p. 4831-4845 15 p.

Research output: Contribution to journal › Article

major histocompatibility complex
Histocompatibility
Major Histocompatibility Complex
intestinal microorganisms
polymorphism
36 Citations (Scopus)

PH is a good predictor of the distribution of anoxygenic purple phototrophic bacteria in Arctic soils

Feng, Y., Grogan, P., Caporaso, J. G., Zhang, H., Lin, X., Knight, R. & Chu, H., 2014, In : Soil Biology and Biochemistry. 74, p. 193-200 8 p.

Research output: Contribution to journal › Article

Proteobacteria
photosynthetic bacteria
Arctic region
Soil
bacterium
254 Citations (Scopus)

Subsampled open-reference clustering creates consistent, comprehensive OTU definitions and scales to billions of sequences

Rideout, J. R., He, Y., Navas-Molina, J. A., Walters, W. A., Ursell, L. K., Gibbons, S. M., Chase, J., McDonald, D., Gonzalez, A., Robbins-Pianka, A., Clemente, J. C., Gilbert, J. A., Huse, S. M., Zhou, H. W., Knight, R. & Caporaso, J. G., 2014, In : PeerJ. 2014, 1, e545.

Research output: Contribution to journal › Article

Cluster Analysis
ribosomal RNA
Programming Languages
Workflow
Software packages
77 Citations (Scopus)

The large-scale blast score ratio (LS-BSR) pipeline: A method to rapidly compare genetic content between bacterial genomes

Sahl, J. W., Caporaso, J. G., Rasko, D. A. & Keim, P. S., 2014, In : PeerJ. 2014, 1, e332.

Research output: Contribution to journal › Article

Bacterial Genomes
Pipelines
Genes
Genome
genome
40 Citations (Scopus)

The personal human oral microbiome obscures the effects of treatment on periodontal disease

Schwarzberg, K., Le, R., Bharti, B., Lindsay, S., Casaburi, G., Salvatore, F., Saber, M. H., Alonaizan, F., Slots, J., Gottlieb, R. A., Caporaso, J. G. & Kelley, S. T., Jan 29 2014, In : PLoS One. 9, 1, e86708.

Research output: Contribution to journal › Article

Periodontitis
Microbiota
Periodontal Diseases
mouth
Fusobacterium
2013
151 Citations (Scopus)

A meta-analysis of changes in bacterial and archaeal communities with time

Shade, A., Caporaso, J. G., Handelsman, J., Knight, R. & Fierer, N., Aug 2013, In : ISME Journal. 7, 8, p. 1493-1506 14 p.

Research output: Contribution to journal › Article

meta-analysis
microbial communities
Meta-Analysis
microbial community
animal community
69 Citations (Scopus)

Bacterial Diversity in Two Neonatal Intensive Care Units (NICUs)

Hewitt, K. M., Mannino, F. L., Gonzalez, A., Chase, J. H., Caporaso, J. G., Knight, R. & Kelley, S. T., Jan 29 2013, In : PLoS One. 8, 1, e54703.

Research output: Contribution to journal › Article

Intensive care units
Neonatal Intensive Care Units
sampling
Enterobacteriales
ribosomal RNA
338 Citations (Scopus)

Cohabiting family members share microbiota with one another and with their dogs

Song, S. J., Lauber, C., Costello, E. K., Lozupone, C. A., Humphrey, G., Berg-Lyons, D., Caporaso, J. G., Knights, D., Clemente, J. C., Nakielny, S., Gordon, J. I., Fierer, N. & Knight, R., Apr 16 2013, In : eLife. 2013, 2, e00458.

Research output: Contribution to journal › Article

Microbiota
Skin
Dogs
Nutrition
Ownership
16 Citations (Scopus)

Collaborative cloud-enabled tools allow rapid, reproducible biological insights

Ragan-Kelley, B., Walters, W. A., McDonald, D., Riley, J., Granger, B. E., Gonzalez, A., Knight, R., Perez, F. & Caporaso, J. G., Mar 2013, In : ISME Journal. 7, 3, p. 461-464 4 p.

Research output: Contribution to journal › Article

microbiology
Microbiology
Computational Biology
bioinformatics
Software
1 Citation (Scopus)

Cyber-eco technology: Engineering of ecological systems

Flikkema, P. G., 2013, In : Proceedings of the IEEE. 101, 5, p. 1031-1033 3 p., 6504492.

Research output: Contribution to journal › Article

Engineering technology
Earth (planet)
Water pollution
Biodiversity
Air pollution