Electrical Engineering and Computer Science

Search results

  • 2021

    Birdsong Detection at the Edge with Deep Learning

    DIsabato, S., Canonaco, G., Flikkema, P. G., Roveri, M. & Alippi, C., Aug 2021, Proceedings - 2021 IEEE International Conference on Smart Computing, SMARTCOMP 2021. Institute of Electrical and Electronics Engineers Inc., p. 9-16 8 p. (Proceedings - 2021 IEEE International Conference on Smart Computing, SMARTCOMP 2021).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Cigarette smoking and opium use in relation to the oral microbiota in Iran

    Wu, Z., Han, Y., Caporaso, J. G., Bokulich, N., Mohamadkhani, A., Moayyedkazemi, A., Hua, X., Kamangar, F., Wan, Y., Suman, S., Zhu, B., Hutchinson, A., Dagnall, C., Jones, K., Hicks, B., Shi, J., Malekzadeh, R., Abnet, C. C., Pourshams, A. & Vogtmann, E., Oct 2021, In: Microbiology spectrum. 9, 2, e00138-21.

    Research output: Contribution to journalArticlepeer-review

  • Designing inclusive HPV cancer vaccines and increasing uptake among native americans—A cultural perspective review

    Bordeaux, S. J., Baca, A. W., Begay, R. L., Gachupin, F. C., Gregory Caporaso, J., Herbst-Kralovetz, M. M. & Lee, N. R., Oct 2021, In: Current Oncology. 28, 5, p. 3705-3716 12 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
  • Experiences and lessons learned from two virtual, hands-on microbiome bioinformatics workshops

    Dillon, M. R., Bolyen, E., Adamov, A., Belk, A., Borsom, E., Burcham, Z., Debelius, J. W., Deel, H., Emmons, A., Estaki, M., Herman, C., Keefe, C. R., Morton, J. T., Oliveira, R. R. M., Sanchez, A., Simard, A., Vázquez-Baeza, Y., Ziemski, M., Miwa, H. E., Kerere, T. A. & 11 others, Coote, C., Bonneau, R., Knight, R., Oliveira, G., Gopalasingam, P., Kaehler, B. D., Cope, E. K., Metcalf, J. L., Robeson, M. S., Bokulich, N. A. & Gregory Caporaso, J., Jun 2021, In: PLoS Computational Biology. 17, 6, e1009056.

    Research output: Contribution to journalArticlepeer-review

    Open Access
  • Impact of Different Exercise Modalities on the Human Gut Microbiome

    Bycura, D., Santos, A. C., Shiffer, A., Kyman, S., Winfree, K., Sutliffe, J., Pearson, T., Sonderegger, D., Cope, E. & Caporaso, J. G., Feb 2021, In: Sports. 9, 2, p. 1-22 22 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    10 Scopus citations
  • Leptospira in river and soil in a highly endemic area of Ecuador

    Miller, E., Barragan, V., Chiriboga, J., Weddell, C., Luna, L., Jiménez, D. J., Aleman, J., Mihaljevic, J. R., Olivas, S., Marks, J., Izurieta, R., Nieto, N., Keim, P., Trueba, G., Caporaso, J. G. & Pearson, T., Dec 2021, In: BMC microbiology. 21, 1, 17.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    1 Scopus citations
  • 2020

    An early pandemic analysis of sars-cov-2 population structure and dynamics in arizona

    Ladner, J. T., Larsen, B. B., Bowers, J. R., Hepp, C. M., Bolyen, E., Folkerts, M., Sheridan, K., Pfeiffer, A., Yaglom, H., Lemmer, D., Sahl, J. W., Kaelin, E. A., Maqsood, R., Bokulich, N. A., Quirk, G., Watts, T. D., Komatsu, K. K., Waddell, V., Lim, E. S., Caporaso, J. G. & 3 others, Engelthaler, D. M., Worobey, M. & Keim, P., Sep 1 2020, In: mBio. 11, 5, p. 1-13 13 p., e02107-20.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    9 Scopus citations
  • Association of Body Mass Index with Fecal Microbial Diversity and Metabolites in the Northern Finland Birth Cohort

    Loftfield, E., Herzig, K. H., Caporaso, J. G., Derkach, A., Wan, Y., Byrd, D. A., Vogtmann, E., Männikkö, M., Karhunen, V., Knight, R., Gunter, M. J., Järvelin, M. R. & Sinha, R., Nov 1 2020, In: Cancer Epidemiology Biomarkers and Prevention. 29, 11, p. 2289-2299 11 p.

    Research output: Contribution to journalArticlepeer-review

    7 Scopus citations
  • Dynamic Computational Diversity with Multi-Radix Logic and Memory

    Flikkema, P. G., Palmer, J., Yalcin, T. & Cambou, B., Sep 22 2020, 2020 IEEE High Performance Extreme Computing Conference, HPEC 2020. Institute of Electrical and Electronics Engineers Inc., 9286255. (2020 IEEE High Performance Extreme Computing Conference, HPEC 2020).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Microbiotyping the Sinonasal Microbiome

    Bassiouni, A., Paramasivan, S., Shiffer, A., Dillon, M. R., Cope, E. K., Cooksley, C., Ramezanpour, M., Moraitis, S., Ali, M. J., Bleier, B. S., Callejas, C., Cornet, M. E., Douglas, R. G., Dutra, D., Georgalas, C., Harvey, R. J., Hwang, P. H., Luong, A. U., Schlosser, R. J., Tantilipikorn, P. & 5 others, Tewfik, M. A., Vreugde, S., Wormald, P. J., Caporaso, J. G. & Psaltis, A. J., Apr 8 2020, In: Frontiers in Cellular and Infection Microbiology. 10, 137.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    7 Scopus citations
  • Oral microbial community composition is associated with pancreatic cancer: A case-control study in Iran

    Vogtmann, E., Han, Y., Caporaso, J. G., Bokulich, N., Mohamadkhani, A., Moayyedkazemi, A., Hua, X., Kamangar, F., Wan, Y., Suman, S., Zhu, B., Hutchinson, A., Dagnall, C., Jones, K., Hicks, B., Shi, J., Malekzadeh, R., Abnet, C. C. & Pourshams, A., Jan 1 2020, In: Cancer Medicine. 9, 2, p. 797-806 10 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    18 Scopus citations
  • Phylogenetic farming: Can evolutionary history predict crop rotation via the soil microbiome?

    Kaplan, I., Bokulich, N. A., Caporaso, J. G., Enders, L. S., Ghanem, W. & Ingerslew, K. S., Sep 1 2020, In: Evolutionary Applications. 13, 8, p. 1984-1999 16 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    7 Scopus citations
  • QIIME 2 Enables Comprehensive End-to-End Analysis of Diverse Microbiome Data and Comparative Studies with Publicly Available Data

    Estaki, M., Jiang, L., Bokulich, N. A., McDonald, D., González, A., Kosciolek, T., Martino, C., Zhu, Q., Birmingham, A., Vázquez-Baeza, Y., Dillon, M. R., Bolyen, E., Caporaso, J. G. & Knight, R., Jun 1 2020, In: Current protocols in bioinformatics. 70, 1, e100.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    29 Scopus citations
  • Reproducibly sampling SARS-CoV-2 genomes across time, geography, and viral diversity

    Caporaso, J. G., Bolyen, E., Dillon, M. R., Bokulich, N. A., Ladner, J. T., Larsen, B. B., Hepp, C. M., Lemmer, D., Sahl, J. W., Sanchez, A., Holdgraf, C., Sewell, C., Choudhury, A. G., Stachurski, J., McKay, M., Simard, A., Engelthaler, D. M., Worobey, M. & Keim, P., 2020, In: F1000Research. 9, 657.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View

    Xavier, J. B., Young, V. B., Skufca, J., Ginty, F., Testerman, T., Pearson, A. T., Macklin, P., Mitchell, A., Shmulevich, I., Xie, L., Caporaso, J. G., Crandall, K. A., Simone, N. L., Godoy-Vitorino, F., Griffin, T. J., Whiteson, K. L., Gustafson, H. H., Slade, D. J., Schmidt, T. M., Walther-Antonio, M. R. S. & 10 others, Korem, T., Webb-Robertson, B. J. M., Styczynski, M. P., Johnson, W. E., Jobin, C., Ridlon, J. M., Koh, A. Y., Yu, M., Kelly, L. & Wargo, J. A., Mar 2020, In: Trends in Cancer. 6, 3, p. 192-204 13 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    53 Scopus citations
  • The international sinonasal microbiome study: A multicentre, multinational characterization of sinonasal bacterial ecology

    Paramasivan, S., Bassiouni, A., Shiffer, A., Dillon, M. R., Cope, E. K., Cooksley, C., Ramezanpour, M., Moraitis, S., Ali, M. J., Bleier, B., Callejas, C., Cornet, M. E., Douglas, R. G., Dutra, D., Georgalas, C., Harvey, R. J., Hwang, P. H., Luong, A. U., Schlosser, R. J., Tantilipikorn, P. & 5 others, Tewfik, M. A., Vreugde, S., Wormald, P. J., Caporaso, J. G. & Psaltis, A. J., Aug 1 2020, In: Allergy: European Journal of Allergy and Clinical Immunology. 75, 8, p. 2033-2045 13 p.

    Research output: Contribution to journalArticlepeer-review

    16 Scopus citations
  • 2019

    Author Correction: Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 (Nature Biotechnology, (2019), 37, 8, (852-857), 10.1038/s41587-019-0209-9)

    Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Sep 1 2019, In: Nature Biotechnology. 37, 9, p. 1091 1 p.

    Research output: Contribution to journalComment/debatepeer-review

    Open Access
    79 Scopus citations
  • Control and Optimization of Energy Efficiency in Small-Footprint Embedded Systems: A Coupled Hybrid Systems Model

    Porter, C., Yamamoto, K. & Flikkema, P. G., Mar 2019, Proceedings of 2019 SICE International Symposium on Control Systems, SICE ISCS 2019. Institute of Electrical and Electronics Engineers Inc., p. 1-8 8 p. 8758755. (Proceedings of 2019 SICE International Symposium on Control Systems, SICE ISCS 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Documentation as a cross-cutting concern of sofware

    Palmer, J. D. & McAddis, N., Oct 4 2019, SIGDOC 2019 - Proceedings of the 37th ACM International Conference on the Design of Communication. Association for Computing Machinery, Inc, 18. (SIGDOC 2019 - Proceedings of the 37th ACM International Conference on the Design of Communication).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Domestic canines do not display evidence of gut microbial dysbiosis in the presence of Clostridioides (Clostridium) difficile, despite cellular susceptibility to its toxins

    Stone, N. E., Nunnally, A. E., Jimenez, V., Cope, E. K., Sahl, J. W., Sheridan, K., Hornstra, H. M., Vinocur, J., Settles, E. W., Headley, K. C., Williamson, C. H. D., Rideout, J. R., Bolyen, E., Caporaso, J. G., Terriquez, J., Monroy, F. P., Busch, J. D., Keim, P. & Wagner, D. M., Aug 2019, In: Anaerobe. 58, p. 53-72 20 p.

    Research output: Contribution to journalReview articlepeer-review

    Open Access
    12 Scopus citations
  • Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development

    Pearson, T., Caporaso, J. G., Yellowhair, M., Bokulich, N. A., Padi, M., Roe, D. J., Wertheim, B. C., Linhart, M., Martinez, J. A., Bilagody, C., Hornstra, H., Alberts, D. S., Lance, P. & Thompson, P. A., Feb 1 2019, In: Cancer Medicine. 8, 2, p. 617-628 12 p.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    23 Scopus citations
  • It's how you say it: Identifying appropriate register for chatbot language design

    Chaves, A. P., Doerry, E., Egbert, J. & Gerosa, M., Sep 25 2019, HAI 2019 - Proceedings of the 7th International Conference on Human-Agent Interaction. Association for Computing Machinery, Inc, p. 102-109 8 p. (HAI 2019 - Proceedings of the 7th International Conference on Human-Agent Interaction).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Long-term benefit of Microbiota Transfer Therapy on autism symptoms and gut microbiota

    Kang, D. W., Adams, J. B., Coleman, D. M., Pollard, E. L., Maldonado, J., McDonough-Means, S., Caporaso, J. G. & Krajmalnik-Brown, R., Dec 1 2019, In: Scientific Reports. 9, 1, 5821.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    177 Scopus citations
  • Rapidly processed stool swabs approximate stool microbiota profiles

    Bokulich, N. A., Maldonado, J., Kang, D. W., Krajmalnik-Brown, R. & Caporaso, J. G., Mar 1 2019, In: mSphere. 4, 2, e00208-19.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    7 Scopus citations
  • Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

    Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., Bai, Y., Bisanz, J. E., Bittinger, K., Brejnrod, A., Brislawn, C. J., Brown, C. T., Callahan, B. J., Caraballo-Rodríguez, A. M., Chase, J., Cope, E. K. & 92 others, Da Silva, R., Diener, C., Dorrestein, P. C., Douglas, G. M., Durall, D. M., Duvallet, C., Edwardson, C. F., Ernst, M., Estaki, M., Fouquier, J., Gauglitz, J. M., Gibbons, S. M., Gibson, D. L., Gonzalez, A., Gorlick, K., Guo, J., Hillmann, B., Holmes, S., Holste, H., Huttenhower, C., Huttley, G. A., Janssen, S., Jarmusch, A. K., Jiang, L., Kaehler, B. D., Kang, K. B., Keefe, C. R., Keim, P., Kelley, S. T., Knights, D., Koester, I., Kosciolek, T., Kreps, J., Langille, M. G. I., Lee, J., Ley, R., Liu, Y. X., Loftfield, E., Lozupone, C., Maher, M., Marotz, C., Martin, B. D., McDonald, D., McIver, L. J., Melnik, A. V., Metcalf, J. L., Morgan, S. C., Morton, J. T., Naimey, A. T., Navas-Molina, J. A., Nothias, L. F., Orchanian, S. B., Pearson, T., Peoples, S. L., Petras, D., Preuss, M. L., Pruesse, E., Rasmussen, L. B., Rivers, A., Robeson, M. S., Rosenthal, P., Segata, N., Shaffer, M., Shiffer, A., Sinha, R., Song, S. J., Spear, J. R., Swafford, A. D., Thompson, L. R., Torres, P. J., Trinh, P., Tripathi, A., Turnbaugh, P. J., Ul-Hasan, S., van der Hooft, J. J. J., Vargas, F., Vázquez-Baeza, Y., Vogtmann, E., von Hippel, M., Walters, W., Wan, Y., Wang, M., Warren, J., Weber, K. C., Williamson, C. H. D., Willis, A. D., Xu, Z. Z., Zaneveld, J. R., Zhang, Y., Zhu, Q., Knight, R. & Caporaso, J. G., Aug 1 2019, In: Nature Biotechnology. 37, 8, p. 852-857 6 p.

    Research output: Contribution to journalLetterpeer-review

    2932 Scopus citations
  • Species abundance information improves sequence taxonomy classification accuracy

    Kaehler, B. D., Bokulich, N. A., McDonald, D., Knight, R., Caporaso, J. G. & Huttley, G. A., Dec 1 2019, In: Nature Communications. 10, 1, 4643.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    11 Scopus citations
  • UAV wildlife radiotelemetry: System and methods of localization

    Shafer, M. W., Vega, G., Rothfus, K. & Flikkema, P., Oct 1 2019, In: Methods in Ecology and Evolution. 10, 10, p. 1783-1795 13 p.

    Research output: Contribution to journalArticlepeer-review

    5 Scopus citations
  • 2018

    Best practices for analysing microbiomes

    Knight, R., Vrbanac, A., Taylor, B. C., Aksenov, A., Callewaert, C., Debelius, J., Gonzalez, A., Kosciolek, T., McCall, L. I., McDonald, D., Melnik, A. V., Morton, J. T., Navas, J., Quinn, R. A., Sanders, J. G., Swafford, A. D., Thompson, L. R., Tripathi, A., Xu, Z. Z., Zaneveld, J. R. & 3 others, Zhu, Q., Caporaso, J. G. & Dorrestein, P. C., Jul 1 2018, In: Nature Reviews Microbiology. 16, 7, p. 410-422 13 p.

    Research output: Contribution to journalReview articlepeer-review

    515 Scopus citations
  • Can ternary computing improve information assurance?

    Cambou, B., Flikkema, P. G., Palmer, J., Telesca, D. & Philabaum, C., Mar 2018, In: Cryptography. 2, 1, p. 1-16 16 p., 6.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    19 Scopus citations
  • Cellular mobile telephony

    Flikkema, P. G., Jan 1 2018, The RF and Microwave Handbook: RF and Microwave Applications and Systems. CRC Press, p. 3-1-3-17

    Research output: Chapter in Book/Report/Conference proceedingChapter

  • Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: Report from the Winter Mid-Atlantic Microbiome Meet-up, College Park, MD, January 10, 2018

    Meisel, J. S., Nasko, D. J., Brubach, B., Cepeda-Espinoza, V., Chopyk, J., Corrada-Bravo, H., Fedarko, M., Ghurye, J., Javkar, K., Olson, N. D., Shah, N., Allard, S. M., Bazinet, A. L., Bergman, N. H., Brown, A., Caporaso, J. G., Conlan, S., Diruggiero, J., Forry, S. P., Hasan, N. A. & 16 others, Kralj, J., Luethy, P. M., Milton, D. K., Ondov, B. D., Preheim, S., Ratnayake, S., Rogers, S. M., Rosovitz, M. J., Sakowski, E. G., Schliebs, N. O., Sommer, D. D., Ternus, K. L., Uritskiy, G., Zhang, S. X., Pop, M. & Treangen, T. J., Nov 5 2018, In: Microbiome. 6, 1, 197.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    2 Scopus citations
  • Current understanding of the human microbiome

    Gilbert, J. A., Blaser, M. J., Caporaso, J. G., Jansson, J. K., Lynch, S. V. & Knight, R., Apr 10 2018, In: Nature Medicine. 24, 4, p. 392-400 9 p.

    Research output: Contribution to journalArticlepeer-review

    614 Scopus citations
  • Next steps in studying the human microbiome and health in prospective studies, Bethesda, MD, May 16-17, 2017

    Sinha, R., Ahsan, H., Blaser, M., Caporaso, J. G., Carmical, J. R., Chan, A. T., Fodor, A., Gail, M. H., Harris, C. C., Helzlsouer, K., Huttenhower, C., Knight, R., Kong, H. H., Lai, G. Y., Hutchinson, D. L. S., Le Marchand, L., Li, H., Orlich, M. J., Shi, J., Truelove, A. & 7 others, Verma, M., Vogtmann, E., White, O., Willett, W., Zheng, W., Mahabir, S. & Abnet, C., Nov 26 2018, In: Microbiome. 6, 1, 210.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    14 Scopus citations
  • Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2's q2-feature-classifier plugin

    Bokulich, N. A., Kaehler, B. D., Rideout, J. R., Dillon, M., Bolyen, E., Knight, R., Huttley, G. A. & Gregory Caporaso, J., May 17 2018, In: Microbiome. 6, 1, 90.

    Research output: Contribution to journalArticlepeer-review

    922 Scopus citations
  • q2-longitudinal: Longitudinal and paired-sample analyses of microbiome data

    Bokulich, N. A., Dillon, M. R., Zhang, Y., Rideout, J. R., Bolyen, E., Li, H., Albert, P. S. & Gregory Caporaso, J., Dec 2018, In: mSystems. 3, 6, e00219-18.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    73 Scopus citations
  • q2-sample-classifier: machine-learning tools for microbiome classification and regression

    Bokulich, N. A., Dillon, M. R., Bolyen, E., Kaehler, B. D., Huttley, G. A. & Caporaso, J. G., 2018, In: Journal of Open Research Software. 3, 30, 934.

    Research output: Contribution to journalArticlepeer-review

    Open Access
    42 Scopus citations
  • Qiita: rapid, web-enabled microbiome meta-analysis

    Gonzalez, A., Navas-Molina, J. A., Kosciolek, T., McDonald, D., Vázquez-Baeza, Y., Ackermann, G., DeReus, J., Janssen, S., Swafford, A. D., Orchanian, S. B., Sanders, J. G., Shorenstein, J., Holste, H., Petrus, S., Robbins-Pianka, A., Brislawn, C. J., Wang, M., Rideout, J. R., Bolyen, E., Dillon, M. & 3 others, Caporaso, J. G., Dorrestein, P. C. & Knight, R., Oct 1 2018, In: Nature Methods. 15, 10, p. 796-798 3 p.

    Research output: Contribution to journalArticlepeer-review

    161 Scopus citations
  • Species-level functional profiling of metagenomes and metatranscriptomes

    Franzosa, E. A., McIver, L. J., Rahnavard, G., Thompson, L. R., Schirmer, M., Weingart, G., Lipson, K. S., Knight, R., Caporaso, J. G., Segata, N. & Huttenhower, C., Nov 1 2018, In: Nature Methods. 15, 11, p. 962-968 7 p.

    Research output: Contribution to journalArticlepeer-review

    450 Scopus citations
  • Support of distributed ecological experiments via closed-loop environmental control

    Knapp, J. D., Middleton, M., Heinrich, P., Whipple, A. V. & Flikkema, P. G., Apr 6 2018, 2017 IEEE Conference on Technologies for Sustainability, SusTech 2017. Institute of Electrical and Electronics Engineers Inc., p. 1-6 6 p. (2017 IEEE Conference on Technologies for Sustainability, SusTech 2017; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • When does wet drywall not grow mold?

    Lepine, C., Fan, P., Scott, J., Caporaso, J. G. & Siegel, J. A., 2018, 15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018. International Society of Indoor Air Quality and Climate, (15th Conference of the International Society of Indoor Air Quality and Climate, INDOOR AIR 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • 2017

    A communal catalogue reveals Earth's multiscale microbial diversity

    Earth Microbiome Project Consortium, Nov 23 2017, In: Nature. 551, 7681, p. 457-463 7 p.

    Research output: Contribution to journalArticlepeer-review

    822 Scopus citations
  • Adapting processor architectures for the periphery of the IoT nervous system

    Flikkema, P. G. & Cambou, B., Feb 6 2017, 2016 IEEE 3rd World Forum on Internet of Things, WF-IoT 2016. Institute of Electrical and Electronics Engineers Inc., p. 615-620 6 p. 7845427. (2016 IEEE 3rd World Forum on Internet of Things, WF-IoT 2016).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Scopus citations
  • Design and implementation of an energy-neutral solar energy system for wireless sensor-actuator nodes

    Knapp, J. D. & Flikkema, P. G., Aug 23 2017, GIoTS 2017 - Global Internet of Things Summit, Proceedings. Institute of Electrical and Electronics Engineers Inc., 8016244. (GIoTS 2017 - Global Internet of Things Summit, Proceedings).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Scopus citations
  • Development of a datalogger for assessment of solar energy harvesting in submarine environments

    Bruce, T., Morris, C., Adoram-Kershner, L., Holser, R., Costa, D., Flikkema, P. G. & Shafer, M. W., Dec 19 2017, OCEANS 2017 � Anchorage. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. (OCEANS 2017 - Anchorage; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Scopus citations
  • Microbiota Transfer Therapy alters gut ecosystem and improves gastrointestinal and autism symptoms: An open-label study

    Kang, D. W., Adams, J. B., Gregory, A. C., Borody, T., Chittick, L., Fasano, A., Khoruts, A., Geis, E., Maldonado, J., McDonough-Means, S., Pollard, E. L., Roux, S., Sadowsky, M. J., Lipson, K. S., Sullivan, M. B., Caporaso, J. G. & Krajmalnik-Brown, R., 2017, In: Microbiome. 5, 1, 10.

    Research output: Contribution to journalArticlepeer-review

    511 Scopus citations
  • Modeling and testing solar power for globally migrating submarine systems

    Adoram-Kershner, L., Bruce, T., Morris, C., Holser, R., Costa, D., Flikkema, P. G. & Shafer, M. W., Dec 19 2017, OCEANS 2017 � Anchorage. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. (OCEANS 2017 - Anchorage; vol. 2017-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Scopus citations
  • Multi-omics analysis of periodontal pocket microbial communities pre- and posttreatment

    Califf, K. J., Schwarzberg-Lipson, K., Garg, N., Gibbons, S. M., Caporaso, J. G., Slots, J., Cohen, C., Dorrestein, P. C. & Kelley, S. T., May 1 2017, In: mSystems. 2, 3, e00016.

    Research output: Contribution to journalArticlepeer-review

    31 Scopus citations
  • Self-adaptive and resilient urban networking infrastructure for disasters and smart city services

    Flikkema, P. G. & Vigil-Hayes, M., Jul 1 2017, Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017. Nie, J-Y., Obradovic, Z., Suzumura, T., Ghosh, R., Nambiar, R., Wang, C., Zang, H., Baeza-Yates, R., Baeza-Yates, R., Hu, X., Kepner, J., Cuzzocrea, A., Tang, J. & Toyoda, M. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 4074-4079 6 p. (Proceedings - 2017 IEEE International Conference on Big Data, Big Data 2017; vol. 2018-January).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Significant impacts of increasing aridity on the arid soil microbiome

    Neilson, J. W., Califf, K., Cardona, C., Copeland, A., Van Treuren, W., Josephson, K. L., Knight, R., Gilbert, J. A., Quade, J., Caporaso, J. G. & Maier, R. M., May 1 2017, In: mSystems. 2, 3, e00195.

    Research output: Contribution to journalArticlepeer-review

    65 Scopus citations
  • The NAU/CQUPT 3+1 program in electrical engineering

    Mlsna, P. A., Cheng, F., Scott, D. R., Yang, J., Li, G. & Zhou, X., Jun 28 2017.

    Research output: Contribution to conferencePaperpeer-review