Research Output 1977 2020

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2020

The soil priming effect: Consistent across ecosystems, elusive mechanisms

Liu, X. J. A., Finley, B. K., Mau, R. L., Schwartz, E., Dijkstra, P., Bowker, M. A. & Hungate, B. A., Jan 2020, In : Soil Biology and Biochemistry. 140, 107617.

Research output: Contribution to journalArticle

Ecosystem
Soil
substrate
ecosystems
ecosystem
2019
1 Citation (Scopus)

A global to local genomics analysis of clostridioides difficile ST1/RT027 identifies cryptic transmission events in a northern Arizona healthcare network

Williamson, C. H. D., Stone, N. E., Nunnally, A. E., Hornstra, H. M., Wagner, D. M., Roe, C. C., Vazquez, A. J., Nandurkar, N., Vinocur, J., Terriquez, J., Gillece, J., Travis, J., Lemmer, D., Keim, P. S. & Sahl, J. W., Jul 1 2019, In : Microbial Genomics. 5, 7, 000271.

Research output: Contribution to journalArticle

Open Access
Ribotyping
Genomics
Genome
Delivery of Health Care
Infection
1 Citation (Scopus)

Alternative mating tactics in socially monogamous prairie voles, Microtus ochrogaster

Shuster, S. M., Willen, R. M., Keane, B. & Solomon, N. G., Jan 1 2019, In : Frontiers in Ecology and Evolution. 7, FEB, 007.

Research output: Contribution to journalArticle

Open Access
Microtus ochrogaster
prairie
fitness
mating systems
reproductive strategy
1 Citation (Scopus)
Comparative Anatomy
Cyprinodontiformes
Skeleton
anatomy
skeleton

A single introduction of Yersinia pestis to Brazil during the 3rd plague pandemic

Vogler, A. J., Sahl, J. W., Leal, N. C., Sobreira, M., Williamson, C. H. D., Bollig, M. C., Birdsell, D. N., Rivera, A., Thompson, B., Nottingham, R., Rezende, A. M., Keim, P. S., Almeida, A. M. P. & Wagner, D. M., Jan 1 2019, In : PLoS One. 14, 1, e0209478.

Research output: Contribution to journalArticle

Yersinia pestis
Plague
plague
Pandemics
pandemic
Boerhavia
Nyctaginaceae
traps
bird
mortality

Axial variation of xylem conduits in the Earth’s tallest trees

Williams, C. B., Anfodillo, T., Crivellaro, A., Lazzarin, M., Dawson, T. E. & Koch, G. W., Jan 1 2019, In : Trees - Structure and Function.

Research output: Contribution to journalArticle

Xylem
xylem
fluid mechanics
Sequoiadendron
hydraulics

Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico

Hall, C. M., Jaramillo, S., Jimenez, R., Stone, N. E., Centner, H., Busch, J. D., Bratsch, N., Roe, C. C., Gee, J. E., Hoffmaster, A. R., Rivera-Garcia, S., Soltero, F., Ryff, K., Perez-Padilla, J., Keim, P. S., Sahl, J. W. & Wagner, D. M., Sep 1 2019, In : PLoS neglected tropical diseases. 13, 9, p. e0007727

Research output: Contribution to journalArticle

Open Access
Melioidosis
Burkholderia pseudomallei
Puerto Rico
Soil
Burkholderia
Connectin
Muscle
Calcium
Muscles
Actins

Caprine humoral response to burkholderia pseudomallei antigens during acute melioidosis from aerosol exposure

Yi, J., Simpanya, M. F., Settles, E. W., Shannon, A. B., Hernandez, K., Pristo, L., Keener, M. E., Hornstra, H., Busch, J. D., Soffler, C., Brett, P. J., Currie, B. J., Bowen, R. A., Tuanyok, A. & Keim, P. S., Feb 1 2019, In : PLoS Neglected Tropical Diseases. 13, 2, e0006851.

Research output: Contribution to journalArticle

Open Access
Melioidosis
Burkholderia pseudomallei
Aerosols
Antigens
Goats
3 Citations (Scopus)

Citizen science informs human-tick exposure in the Northeastern United States

Porter, W. T., Motyka, P. J., Wachara, J., Barrand, Z. A., Hmood, Z., McLaughlin, M., Pemberton, K. & Nieto, N. C., May 7 2019, In : International Journal of Health Geographics. 18, 1, 9.

Research output: Contribution to journalArticle

Open Access
New England
Ticks
Pathogens
Tick-Borne Diseases
Relapsing Fever
12 Citations (Scopus)

Clarifying the interpretation of carbon use efficiency in soil through methods comparison

Geyer, K. M., Dijkstra, P., Sinsabaugh, R. & Frey, S. D., Jan 1 2019, In : Soil Biology and Biochemistry. 128, p. 79-88 10 p.

Research output: Contribution to journalArticle

Soil
Carbon
carbon
soil
substrate
1 Citation (Scopus)

Climate-driven reduction of genetic variation in plant phenology alters soil communities and nutrient pools

Ware, I. M., Van Nuland, M. E., Schweitzer, J. A., Yang, Z., Schadt, C. W., Sidak-Loftis, L. C., Stone, N. E., Busch, J. D., Wagner, D. M. & Bailey, J. K., Jan 1 2019, (Accepted/In press) In : Global Change Biology.

Research output: Contribution to journalArticle

ecosystem function
phenology
Nutrients
genetic variation
Ecosystems
1 Citation (Scopus)

Computationally optimizing the compliance of multilayered biomimetic tissue engineered vascular grafts

Tamimi, E. A., Ardila, D. C., Ensley, B. D., Kellar, R. S. & Vande Geest, J. P., Jun 1 2019, In : Journal of Biomechanical Engineering. 141, 6, 061003.

Research output: Contribution to journalArticle

Blood Vessel Prosthesis
Biomimetics
Grafts
Compliance
Tissue
4 Citations (Scopus)

Decadal biomass increment in early secondary succession woody ecosystems is increased by CO 2 enrichment

Walker, A. P., De Kauwe, M. G., Medlyn, B. E., Zaehle, S., Iversen, C. M., Asao, S., Guenet, B., Harper, A., Hickler, T., Hungate, B. A., Jain, A. K., Luo, Y., Lu, X., Lu, M., Luus, K., Megonigal, J. P., Oren, R., Ryan, E., Shu, S., Talhelm, A. & 7 others, Wang, Y. P., Warren, J. M., Werner, C., Xia, J., Yang, B., Zak, D. R. & Norby, R. J., Dec 1 2019, In : Nature Communications. 10, 1, 454.

Research output: Contribution to journalArticle

Open Access
ecosystems
Carbon Monoxide
biomass
Biomass
Ecosystems

Detection of Pseudogymnoascus destructans on Wisconsin Bats During Summer

Huebschman, J. J., Hoerner, S. A., White, J. P., Kaarakka, H. M., Parise, K. L. & Foster, J. T., Jul 1 2019, In : Journal of wildlife diseases. 55, 3, p. 673-677 5 p.

Research output: Contribution to journalArticle

bat
Chiroptera
summer
Lasiurus borealis
Pseudogymnoascus destructans
5 Citations (Scopus)

Direct detection of Coccidioides from Arizona soils using CocciENV, a highly sensitive and specific real-time PCR assay

Bowers, J. R., Parise, K. L., Kelley, E. J., Lemmer, D., Schupp, J. M., Driebe, E. M., Engelthaler, D. M., Keim, P. S. & Barker, B. M., Feb 1 2019, In : Medical Mycology. 57, 2, p. 246-255 10 p.

Research output: Contribution to journalArticle

Coccidioides
Real-Time Polymerase Chain Reaction
Soil
Coccidioidomycosis
Southwestern United States

Ecosystem hero and villain: Native frog consumes rice pests, while the invasive cane toad feasts on beneficial arthropods

Shuman-Goodier, M. E., Diaz, M. I., Almazan, M. L., Singleton, G. R., Hadi, B. A. R. & Propper, C. R., Jul 1 2019, In : Agriculture, Ecosystems and Environment. 279, p. 100-108 9 p.

Research output: Contribution to journalArticle

beneficial arthropods
Bufo marinus
toad
frog
arthropod
3 Citations (Scopus)

Effects of ursodeoxycholic acid on the gut microbiome and colorectal adenoma development

Pearson, T. R., Caporaso, J. G., Yellowhair, M., Bokulich, N. A., Padi, M., Roe, D. J., Wertheim, B. C., Linhart, M., Martinez, J. A., Bilagody, C., Hornstra, H., Alberts, D. S., Lance, P. & Thompson, P. A., Feb 1 2019, In : Cancer Medicine. 8, 2, p. 617-628 12 p.

Research output: Contribution to journalArticle

Open Access
Ursodeoxycholic Acid
Adenoma
Microbiota
Bile Acids and Salts
Gastrointestinal Microbiome

Environmental filtering of body size and darker coloration in pollinator communities indicate thermal restrictions on bees, but not flies, at high elevations

McCabe, L. M., Cobb, N. S. & Butterfield, B. J., Jan 1 2019, In : PeerJ. 2019, 10, e7867.

Research output: Contribution to journalArticle

Open Access
Bees
Body Size
pollinating insects
Diptera
Apoidea
Bouteloua gracilis
Southwestern United States
genetic structure
genetic variation
cultivar
4 Citations (Scopus)

Evolutionary history constrains microbial traits across environmental variation

Morrissey, E. M., Mau, R. L., Hayer, M., Liu, X. J. A., Schwartz, E., Dijkstra, P., Koch, B. J., Allen, K., Blazewicz, S. J., Hofmockel, K., Pett-Ridge, J. & Hungate, B. A., Jul 1 2019, In : Nature Ecology and Evolution. 3, 7, p. 1064-1069 6 p.

Research output: Contribution to journalArticle

history
ecosystems
carbon
organisms
ecosystem

Ewald R. Weibel (1929-2019)

Hoppeler, H. & Lindstedt, S. L., May 2 2019, In : The Journal of experimental biology. 222

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Field trial of a probiotic bacteria to protect bats from white-nose syndrome

Hoyt, J. R., Langwig, K. E., White, J. P., Kaarakka, H. M., Redell, J. A., Parise, K. L., Frick, W. F., Foster, J. T. & Kilpatrick, A. M., Dec 1 2019, In : Scientific Reports. 9, 1, 9158.

Research output: Contribution to journalArticle

Open Access
probiotics
Chiroptera
field experimentation
Pseudomonas fluorescens
bacteria
2 Citations (Scopus)

Fifty years of cave arthropod sampling: Techniques and best practices

Wynne, J. J., Howarth, F. G., Sommer, S. A. & Dickson, B. G., Jan 1 2019, In : International Journal of Speleology. 48, 1, p. 33-48 16 p.

Research output: Contribution to journalArticle

Open Access
arthropod
cave
invertebrate
sampling technique
sampling
1 Citation (Scopus)

Genetic increases in growth do not lead to trade-offs with ecologically important litter and fine root traits in Norway spruce

Senior, J. K., Iason, G. R., Gundale, M., Whitham, T. G. & Axelsson, E. P., Aug 15 2019, In : Forest Ecology and Management. 446, p. 54-62 9 p.

Research output: Contribution to journalArticle

fine root
litters (young animals)
Picea abies
litter
tree and stand measurements

Genetic variation in tree leaf chemistry predicts the abundance and activity of autotrophic soil microorganisms

Selmants, P. C., Schweitzer, J. A., Adair, K. L., Holeski, L. M., Lindroth, R. L., Hart, S. C. & Whitham, T. G., Aug 1 2019, In : Ecosphere. 10, 8, e02795.

Research output: Contribution to journalArticle

Open Access
soil microorganism
proanthocyanidins
soil microorganisms
tannin
genetic variation
2 Citations (Scopus)

Genomic Analyses of Acute Flaccid Myelitis Cases among a Cluster in Arizona Provide Further Evidence of Enterovirus D68 Role

Bowers, J. R., Valentine, M., Harrison, V., Fofanov, V. Y., Gillece, J., Delisle, J., Patton, B., Schupp, J., Sheridan, K., Lemmer, D., Ostdiek, S., Bains, H. K., Heim, J., Sylvester, T., Prasai, S., Kretschmer, M., Fowle, N., Komatsu, K., Brady, S., Robinson, S. & 7 others, Fitzpatrick, K., Ostovar, G. A., Alsop, E., Hutchins, E., Jensen, K., Keim, P. S. & Engelthaler, D. M., Jan 22 2019, In : mBio. 10, 1

Research output: Contribution to journalArticle

Open Access
Myelitis
Enterovirus
Poliovirus
Metagenomics
Nervous System Diseases
2 Citations (Scopus)

Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study

Pegoraro, E., Mauritz, M., Bracho, R., Ebert, C., Dijkstra, P., Hungate, B. A., Konstantinidis, K. T., Luo, Y., Schädel, C., Tiedje, J. M., Zhou, J. & Schuur, E. A. G., Feb 1 2019, In : Soil Biology and Biochemistry. 129, p. 201-211 11 p.

Research output: Contribution to journalArticle

age of soil
permafrost
soil carbon
glucose
Soil
2 Citations (Scopus)

Heritable phytohormone profiles of poplar genotypes vary in resistance to a galling aphid

Body, M. J. A., Zinkgraf, M. S., Whitham, T. G., Lin, C. H., Richardson, R. A., Appel, H. M. & Schultz, J. C., Jun 1 2019, In : Molecular Plant-Microbe Interactions. 32, 6, p. 654-672 19 p.

Research output: Contribution to journalArticle

Open Access
Aphids
Plant Growth Regulators
galls
plant hormones
Insects

Impact of a 6-Month Micronutrient-Dense Plant-Rich Nutrition Intervention on Health and Well-Being at the Worksite

Sutliffe, J. T., Gardner, J. C., Gorman, M. M., Carnot, M. J., Wetzel, W. S., Fortin, T., Sutliffe, C. A. & Adams, A., Jan 1 2019, In : Journal of Nutrition and Metabolism. 2019, 2609516.

Research output: Contribution to journalArticle

Open Access
nutritional intervention
Micronutrients
Workplace
human resources
Waist Circumference

Impact of binge alcohol intoxication on the humoral immune response during burkholderia spp. Infections

Moreno, R. M., Jimenez, V. & Monroy, F. P., May 2019, In : Microorganisms. 7, 5, 125.

Research output: Contribution to journalArticle

Open Access
Burkholderia
Alcoholic Intoxication
Humoral Immunity
Alcohols
Infection
3 Citations (Scopus)

In Vitro Scratch Assay to Demonstrate Effects of Arsenic on Skin Cell Migration

Pinto, B. I., Cruz, N. D., Lujan, O. R., Propper, C. R. & Kellar, R. S., Feb 23 2019, In : Journal of visualized experiments : JoVE. 144

Research output: Contribution to journalArticle

Open Access
Arsenic
Wound Healing
Cell Movement
Assays
Tissue culture

Large, high-severity burn patches limit fungal recovery 13 years after wildfire in a ponderosa pine forest

Owen, S. M., Patterson, A. M., Gehring, C. A., Sieg, C. H., Baggett, L. S. & Fulé, P. Z., Dec 2019, In : Soil Biology and Biochemistry. 139, 107616.

Research output: Contribution to journalArticle

Pinus ponderosa
fruiting bodies
wildfires
wildfire
coniferous forests
1 Citation (Scopus)

Legacy effects of tree mortality mediated by ectomycorrhizal fungal communities

Mueller, R. C., Scudder, C. M., Whitham, T. G. & Gehring, C. A., Jan 1 2019, In : New Phytologist.

Research output: Contribution to journalArticle

fungal communities
tree mortality
Mortality
Seedlings
Fungi
Open Access
Astragalus sinicus
double cropping
nutrient use efficiency
tillering
cover crops

Long-term elevated CO2 shifts composition of soil microbial communities in a Californian annual grassland, reducing growth and N utilization potentials

Yang, S., Zheng, Q., Yuan, M., Shi, Z., Chiariello, N. R., Docherty, K. M., Dong, S., Field, C. B., Gu, Y., Gutknecht, J., Hungate, B. A., Le Roux, X., Ma, X., Niboyet, A., Yuan, T., Zhou, J. & Yang, Y., Feb 20 2019, In : Science of the Total Environment. 652, p. 1474-1481 8 p.

Research output: Contribution to journalArticle

microbial community
Genes
grassland
Ribosomal RNA
Soils
1 Citation (Scopus)
Open Access
herbivores
drought
climate change
soil
moths
2 Citations (Scopus)

Modeling cell line-specific recruitment of signaling proteins to the insulin-like growth factor 1 receptor

Erickson, K. E., Rukhlenko, O. S., Shahinuzzaman, M., Slavkova, K. P., Lin, Y. T., Suderman, R., Stites, E. C., Anghel, M., Posner, R. G., Barua, D., Kholodenko, B. N. & Hlavacek, W. S., Jan 1 2019, In : PLoS Computational Biology. 15, 1, p. e1006706

Research output: Contribution to journalArticle

Somatomedin Receptors
Insulin
Growth Factors
Receptor
Phosphotyrosine
Ribosomal DNA
Isotopes
stable isotopes
stable isotope
Soil

Optimal length, calcium sensitivity and twitch characteristics of skeletal muscles from mdm mice with a deletion in N2A titin

Hessel, A. L., Joumaa, V., Eck, S., Herzog, W. & Nishikawa, K. C., Jun 17 2019, In : The Journal of experimental biology. 222

Research output: Contribution to journalArticle

Open Access
Connectin
myositis
muscular dystrophy
Myositis
Muscular Dystrophies

Phylogenetic Analysis of Francisella tularensis Group A.II Isolates from 5 Patients with Tularemia, Arizona, USA, 2015-2017

Birdsell, D. N., Yaglom, H., Rodriguez, E., Engelthaler, D. M., Maurer, M., Gaither, M., Vinocur, J., Weiss, J., Terriquez, J., Komatsu, K., Ormsby, M. E., Gebhardt, M., Solomon, C., Nienstadt, L., Williamson, C. H. D., Sahl, J. W., Keim, P. S. & Wagner, D. M., May 1 2019, In : Emerging infectious diseases. 25, 5, p. 944-946 3 p.

Research output: Contribution to journalArticle

Open Access
Francisella tularensis
Tularemia

Pilot study: Autologous platelet-rich plasma used in a topical cream for facial rejuvenation

Draelos, Z. D., Rheins, L. A., Wootten, S., Kellar, R. S. & Diller, R. B., Jan 1 2019, (Accepted/In press) In : Journal of Cosmetic Dermatology.

Research output: Contribution to journalArticle

Open Access
Rejuvenation
Platelet-Rich Plasma
Up-Regulation
Serum
Refrigeration

Position-specific metabolic probing and metagenomics of microbial communities reveal conserved central carbon metabolic network activities at high temperatures

Thomas, S. C., Tamadonfar, K. O., Seymour, C. O., Lai, D., Dodsworth, J. A., Murugapiran, S. K., Eloe-Fadrosh, E. A., Dijkstra, P. & Hedlund, B. P., Jan 1 2019, In : Frontiers in Microbiology. 10, JULY, 1427.

Research output: Contribution to journalArticle

Open Access
Metagenomics
Metabolic Networks and Pathways
Carbon
Temperature
Metagenome
2 Citations (Scopus)

Predictive genomic traits for bacterial growth in culture versus actual growth in soil

Li, J., Mau, R. L., Dijkstra, P., Koch, B. J., Schwartz, E., Liu, X. J. A., Morrissey, E. M., Blazewicz, S. J., Pett-Ridge, J., Stone, B. W., Hayer, M. & Hungate, B. A., Jan 1 2019, In : ISME Journal.

Research output: Contribution to journalArticle

microbial growth
genomics
Soil
Genome Size
genome
2 Citations (Scopus)

PyBioNetFit and the Biological Property Specification Language

Mitra, E. D., Suderman, R., Colvin, J., Ionkov, A., Hu, A., Sauro, H. M., Posner, R. G. & Hlavacek, W. S., Sep 27 2019, In : iScience. 19, p. 1012-1036 25 p.

Research output: Contribution to journalArticle

Open Access
Specification languages
Model checking
Parameterization
Markup languages
Yeast
Open Access
forest garden
fine root
leaf litter
soil
tannin

Severe thermoregulatory deficiencies in mice with a deletion in the titin gene TTN

Miyano, C. A., Orezzoli, S. F., Buck, C. L. & Nishikawa, K. C., Apr 30 2019, In : The Journal of experimental biology. 222

Research output: Contribution to journalArticle

Open Access
Connectin
gene deletion
myositis
muscular dystrophy
Myositis

Soil microbial biomass increases along elevational gradients in the tropics and subtropics but not elsewhere

He, X., Hou, E., Veen, G. F., Ellwood, M. D. F., Dijkstra, P., Sui, X., Zhang, S., Wen, D. & Chu, C., Jan 1 2019, (Accepted/In press) In : Global Ecology and Biogeography.

Research output: Contribution to journalArticle

subtropics
microbial biomass
tropics
biomass
soil
5 Citations (Scopus)

Structure, spatial dynamics, and stability of novel seed dispersal mutualistic networks in Hawai‘i

Vizentin-Bugoni, J., Tarwater, C. E., Foster, J. T., Drake, D. R., Gleditsch, J. M., Hruska, A. M., Patrick Kelley, J. & Sperry, J. H., Apr 5 2019, In : Science. 364, 6435, p. 78-82 5 p.

Research output: Contribution to journalArticle

Seed Dispersal
Introduced Species
Biological Extinction
Ecosystem
History