Biological Sciences

2021

Adaptive evolution in a conifer hybrid zone is driven by a mosaic of recently introgressed and background genetic variants

Menon, M., Bagley, J. C., Page, G. F. M., Whipple, A. V., Schoettle, A. W., Still, C. J., Wehenkel, C., Waring, K. M., Flores-Renteria, L., Cushman, S. A. & Eckert, A. J., Dec 2021, In: Communications biology. 4, 1, 160.

Research output: Contribution to journal › Article › peer-review

Open Access

Adaptive trait syndromes along multiple economic spectra define cold and warm adapted ecotypes in a widely distributed foundation tree species

Blasini, D. E., Koepke, D. F., Grady, K. C., Allan, G. J., Gehring, C. A., Whitham, T. G., Cushman, S. A. & Hultine, K. R., Mar 2021, In: Journal of Ecology. 109, 3, p. 1298-1318 21 p.

Research output: Contribution to journal › Article › peer-review

A method for experimental warming of developing tree seeds with a common garden demonstration of seedling responses

Moler, E. R. V., Page, G., Flores-Rentería, L., Garms, C. G., Hull, J. B., Cooper, H. F., Swenson, J., Perks, S., Waring, K. M. & Whipple, A. V., Dec 2021, In: Plant Methods. 17, 1, 1.

Research output: Contribution to journal › Article › peer-review

Open Access

A trade-off between plant and soil carbon storage under elevated CO₂

Terrer, C., Phillips, R. P., Hungate, B. A., Rosende, J., Pett-Ridge, J., Craig, M. E., van Groenigen, K. J., Keenan, T. F., Sulman, B. N., Stocker, B. D., Reich, P. B., Pellegrini, A. F. A., Pendall, E., Zhang, H., Evans, R. D., Carrillo, Y., Fisher, J. B., Van Sundert, K., Vicca, S. & Jackson, R. B., Mar 25 2021, In: Nature. 591, 7851, p. 599-603 5 p.

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Burkholderia pseudomallei OMVs derived from infection mimicking conditions elicit similar protection to a live-attenuated vaccine

Baker, S. M., Settles, E. W., Davitt, C., Gellings, P., Kikendall, N., Hoffmann, J., Wang, Y., Bitoun, J., Lodrigue, K. R., Sahl, J. W., Keim, P., Roy, C., McLachlan, J. & Morici, L. A., Dec 2021, In: npj Vaccines. 6, 1, 18.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Burkholderia ubonensis high-level tetracycline resistance is due to efflux pump synergy involving a novel teta(64) resistance determinant

Somprasong, N., Hall, C. M., Webb, J. R., Sahl, J. W., Wagner, D. M., Keim, P., Currie, B. J. & Schweizer, H. P., Mar 2021, In: Antimicrobial Agents and Chemotherapy. 65, 3, e01767-20.

Research output: Contribution to journal › Article › peer-review

Canine brucellosis in Costa Rica reveals widespread Brucella canis infection and the recent introduction of foreign strains

Suárez-Esquivel, M., Ruiz-Villalobos, N., Hidalgo-Jara, W., Chacón-Díaz, C., Zúñiga-Pereira, A. M., Masís-Mora, M., Fernández-Fernández, E., Hernández-Mora, G., Barquero-Calvo, E., Chaves-Olarte, E., Thomson, N. R., Foster, J. T., Moreno, E. & Guzmán-Verri, C., Jun 2021, In: Veterinary Microbiology. 257, 109072.

Research output: Contribution to journal › Article › peer-review

Complete genome sequence of peptacetobacter (Clostridium) hiranonis Strain DGF055142, isolated from dog feces from Flagstaff, Arizona, USA, 2019

Stone, N. E., Nunnally, A. E., Roe, C. C., Hornstra, H. M., Wagner, D. M. & Sahl, J. W., Mar 4 2021, In: Microbiology Resource Announcements. 10, 9, e00067-21.

Research output: Contribution to journal › Article › peer-review

Open Access

Comprehensive estimation of spatial and temporal migratory connectivity across the annual cycle to direct conservation efforts

Knight, E. C., Harrison, A. L., Scarpignato, A. L., Van Wilgenburg, S. L., Bayne, E. M., Ng, J. W., Angell, E., Bowman, R., Brigham, R. M., Drolet, B., Easton, W. E., Forrester, T. R., Foster, J. T., Haché, S., Hannah, K. C., Hick, K. G., Ibarzabal, J., Imlay, T. L., Mackenzie, S. A., Marsh, A. & 9 others, McGuire, L. P., Newberry, G. N., Newstead, D., Sidler, A., Sinclair, P. H., Stephens, J. L., Swanson, D. L., Tremblay, J. A. & Marra, P. P., May 2021, In: Ecography. 44, 5, p. 665-679 15 p.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Connectivity: insights from the U.S. Long Term Ecological Research Network

Iwaniec, D. M., Gooseff, M., Suding, K. N., Samuel Johnson, D., Reed, D. C., Peters, D. P. C., Adams, B., Barrett, J. E., Bestelmeyer, B. T., Castorani, M. C. N., Cook, E. M., Davidson, M. J., Groffman, P. M., Hanan, N. P., Huenneke, L. F., Johnson, P. T. J., McKnight, D. M., Miller, R. J., Okin, G. S., Preston, D. L. & 7 others, Rassweiler, A., Ray, C., Sala, O. E., Schooley, R. L., Seastedt, T., Spasojevic, M. J. & Vivoni, E. R., May 2021, In: Ecosphere. 12, 5, e03432.

Research output: Contribution to journal › Article › peer-review

Open Access

Continent-wide tree fecundity driven by indirect climate effects

Clark, J. S., Andrus, R., Aubry-Kientz, M., Bergeron, Y., Bogdziewicz, M., Bragg, D. C., Brockway, D., Cleavitt, N. L., Cohen, S., Courbaud, B., Daley, R., Das, A. J., Dietze, M., Fahey, T. J., Fer, I., Franklin, J. F., Gehring, C. A., Gilbert, G. S., Greenberg, C. H., Guo, Q. & 43 others, HilleRisLambers, J., Ibanez, I., Johnstone, J., Kilner, C. L., Knops, J., Koenig, W. D., Kunstler, G., LaMontagne, J. M., Legg, K. L., Luongo, J., Lutz, J. A., Macias, D., McIntire, E. J. B., Messaoud, Y., Moore, C. M., Moran, E., Myers, J. A., Myers, O. B., Nunez, C., Parmenter, R., Pearse, S., Pearson, S., Poulton-Kamakura, R., Ready, E., Redmond, M. D., Reid, C. D., Rodman, K. C., Scher, C. L., Schlesinger, W. H., Schwantes, A. M., Shanahan, E., Sharma, S., Steele, M. A., Stephenson, N. L., Sutton, S., Swenson, J. J., Swift, M., Veblen, T. T., Whipple, A. V., Whitham, T. G., Wion, A. P., Zhu, K. & Zlotin, R., Dec 2021, In: Nature Communications. 12, 1, 1242.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Daily forecasting of regional epidemics of coronavirus disease with bayesian uncertainty quantification, United States

Lin, Y. T., Neumann, J., Miller, E. F., Posner, R. G., Mallela, A., Safta, C., Ray, J., Thakur, G., Chinthavali, S. & Hlavacek, W. S., Mar 2021, In: Emerging infectious diseases. 27, 3, p. 767-778 12 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Developmental assays using invasive cane toads, Rhinella marina, reveal safety concerns of a common formulation of the rice herbicide, butachlor

Shuman-Goodier, M. E., Singleton, G. R., Forsman, A. M., Hines, S., Christodoulides, N., Daniels, K. D. & Propper, C. R., Mar 1 2021, In: Environmental Pollution. 272, 115955.

Research output: Contribution to journal › Article › peer-review

1 Scopus citations

Ectomycorrhizal fungal communities differ among parental and hybrid Populus cross types within a natural riparian habitat

Lamit, L. J., Meinhardt, K. A., Flores-Rentería, L., Kovacs, Z. I., Zinkgraf, M., Whitham, T. G. & Gehring, C. A., Aug 2021, In: Fungal Ecology. 52, 101059.

Research output: Contribution to journal › Article › peer-review

Equids engineer desert water availability

Lundgren, E. J., Ramp, D., Stromberg, J. C., Wu, J., Nieto, N. C., Sluk, M., Moeller, K. T. & Wallach, A. D., Apr 30 2021, In: Science. 372, 6541, p. 491-495 5 p.

Research output: Contribution to journal › Article › peer-review

First Case of Brucellosis Caused by an Amphibian-type Brucella

Rouzic, N., Desmier, L., Cariou, M. E., Gay, E., Foster, J. T., Williamson, C. H. D., Schmitt, F., Le Henaff, M., Le Coz, A., Lorléac'h, A., Lavigne, J. P., O'Callaghan, D. & Keriel, A., May 4 2021, In: Clinical Infectious Diseases. 72, 9, p. e404-e407

Research output: Contribution to journal › Article › peer-review

5 Scopus citations

From Bees to Flies: Global Shift in Pollinator Communities Along Elevation Gradients

McCabe, L. M. & Cobb, N. S., Jan 15 2021, In: Frontiers in Ecology and Evolution. 8, 626124.

Research output: Contribution to journal › Article › peer-review

Open Access

Genetic data improves niche model discrimination and alters the direction and magnitude of climate change forecasts

Bothwell, H. M., Evans, L. M., Hersch-Green, E. I., Woolbright, S. A., Allan, G. J. & Whitham, T. G., Apr 2021, In: Ecological Applications. 31, 3, e02254.

Research output: Contribution to journal › Article › peer-review

Genetic structure and population history in two critically endangered Kaua‘i honeycreepers

Cassin-Sackett, L., Campana, M. G., McInerney, N. R., Lim, H. C., Przelomska, N. A. S., Masuda, B., Chesser, R. T., Paxton, E. H., Foster, J. T., Crampton, L. H. & Fleischer, R. C., 2021, (Accepted/In press) In: Conservation Genetics.

Research output: Contribution to journal › Article › peer-review

Genomics, Exometabolomics, and Metabolic Probing Reveal Conserved Proteolytic Metabolism of Thermoflexus hugenholtzii and Three Candidate Species From China and Japan

Thomas, S. C., Payne, D., Tamadonfar, K. O., Seymour, C. O., Jiao, J. Y., Murugapiran, S. K., Lai, D., Lau, R., Bowen, B. P., Silva, L. P., Louie, K. B., Huntemann, M., Clum, A., Spunde, A., Pillay, M., Palaniappan, K., Varghese, N., Mikhailova, N., Chen, I. M., Stamatis, D. & 14 others, Reddy, T. B. K., O’Malley, R., Daum, C., Shapiro, N., Ivanova, N., Kyrpides, N. C., Woyke, T., Eloe-Fadrosh, E., Hamilton, T. L., Dijkstra, P., Dodsworth, J. A., Northen, T. R., Li, W. J. & Hedlund, B. P., May 3 2021, In: Frontiers in Microbiology. 12, 632731.

Research output: Contribution to journal › Article › peer-review

Open Access

Genomics-informed insights into microbial degradation of N,N-dimethylformamide

Li, J., Dijkstra, P., Lu, Q., Wang, S., Chen, S., Li, D., Wang, Z., Jia, Z., Wang, L. & Shim, H., Sep 2021, In: International Biodeterioration and Biodegradation. 163, 105283.

Research output: Contribution to journal › Article › peer-review

Herd immunity drives the epidemic fadeout of avian cholera in Arctic-nesting seabirds

van Dijk, J. G. B., Iverson, S. A., Gilchrist, H. G., Harms, N. J., Hennin, H. L., Love, O. P., Buttler, E. I., Lesceu, S., Foster, J. T., Forbes, M. R. & Soos, C., Dec 2021, In: Scientific Reports. 11, 1, 1046.

Research output: Contribution to journal › Article › peer-review

Open Access

Heterozygous trees rebound the fastest after felling by beavers to positively affect arthropod community diversity

Walker, F. M., Durben, R., Shuster, S. M., Lindroth, R. L. & Whitham, T. G., Jun 2021, In: Forests. 12, 6, 694.

Research output: Contribution to journal › Article › peer-review

Open Access

High intensity muscle stimulation activates a systemic Nrf2-mediated redox stress response

Ostrom, E. L., Valencia, A. P., Marcinek, D. J. & Traustadóttir, T., Aug 20 2021, In: Free Radical Biology and Medicine. 172, p. 82-89 8 p.

Research output: Contribution to journal › Article › peer-review

How close are we to the temperature tipping point of the terrestrial biosphere?

Duffy, K. A., Schwalm, C. R., Arcus, V. L., Koch, G. W., Liang, L. L. & Schipper, L. A., Jan 13 2021, In: Science Advances. 7, 3, eaay1052.

Research output: Contribution to journal › Article › peer-review

Open Access

3 Scopus citations

Impact of Different Exercise Modalities on the Human Gut Microbiome

Bycura, D., Santos, A. C., Shiffer, A., Kyman, S., Winfree, K., Sutliffe, J., Pearson, T., Sonderegger, D., Cope, E. & Caporaso, J. G., Feb 2021, In: Sports. 9, 2, p. 1-22 22 p.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Leptospira in river and soil in a highly endemic area of Ecuador

Miller, E., Barragan, V., Chiriboga, J., Weddell, C., Luna, L., Jiménez, D. J., Aleman, J., Mihaljevic, J. R., Olivas, S., Marks, J., Izurieta, R., Nieto, N., Keim, P., Trueba, G., Caporaso, J. G. & Pearson, T., Dec 2021, In: BMC microbiology. 21, 1, 17.

Research output: Contribution to journal › Article › peer-review

Open Access

Long-Term Survival of Virulent Tularemia Pathogens outside a Host in Conditions That Mimic Natural Aquatic Environments

Golovliov, I., Bäckman, S., Granberg, M., Salomonsson, E., Lundmark, E., Näslund, J., Busch, J. D., Birdsell, D., Sahl, J. W., Wagner, D. M., Johansson, A., Forsman, M. & Thelaus, J., Mar 2021, In: Applied and Environmental Microbiology. 87, 6, p. 1-11 11 p., e02713-20.

Research output: Contribution to journal › Article › peer-review

Open Access

Long-term warming in a Mediterranean-type grassland affects soil bacterial functional potential but not bacterial taxonomic composition

Gao, Y., Ding, J., Yuan, M., Chiariello, N., Docherty, K., Field, C., Gao, Q., Gu, B., Gutknecht, J., Hungate, B. A., Le Roux, X., Niboyet, A., Qi, Q., Shi, Z., Zhou, J. & Yang, Y., Dec 2021, In: npj Biofilms and Microbiomes. 7, 1, 17.

Research output: Contribution to journal › Article › peer-review

Open Access

Lord of the Diptera (and Moths and a Spider): Molecular Diet Analyses and Foraging Ecology of Indiana Bats in Illinois

O'Rourke, D. R., Mangan, M. T., Mangan, K. E., Bokulich, N. A., MacManes, M. D. & Foster, J. T., Feb 16 2021, In: Frontiers in Ecology and Evolution. 9, 623655.

Research output: Contribution to journal › Article › peer-review

Open Access

1 Scopus citations

Mechanistic insights into the success of xenobiotic degraders resolved from metagenomes of microbial enrichment cultures

Li, J., Jia, C., Lu, Q., Hungate, B. A., Dijkstra, P., Wang, S., Wu, C., Chen, S., Li, D. & Shim, H., Sep 15 2021, In: Journal of Hazardous Materials. 418, 126384.

Research output: Contribution to journal › Article › peer-review

Mobility and infectiousness in the spatial spread of an emerging fungal pathogen

Langwig, K. E., White, J. P., Parise, K. L., Kaarakka, H. M., Redell, J. A., DePue, J. E., Scullon, W. H., Foster, J. T., Kilpatrick, A. M. & Hoyt, J. R., May 2021, In: Journal of Animal Ecology. 90, 5, p. 1134-1141 8 p.

Research output: Contribution to journal › Article › peer-review

Net-spinning caddisfly distribution in large regulated rivers

Metcalfe, A. N., Muehlbauer, J. D., Kennedy, T. A., Yackulic, C. B., Dibble, K. L. & Marks, J. C., Jan 2021, In: Freshwater Biology. 66, 1, p. 89-101 13 p.

Research output: Contribution to journal › Article › peer-review

No evidence for enzootic plague within black-tailed prairie dog (Cynomys ludovicianus) populations

Colman, R. E., Brinkerhoff, R. J., Busch, J. D., Ray, C., Doyle, A., Sahl, J. W., Keim, P., Collinge, S. K. & Wagner, D. M., 2021, (Accepted/In press) In: Integrative Zoology.

Research output: Contribution to journal › Article › peer-review

Open Access

Non-cross Bridge Viscoelastic Elements Contribute to Muscle Force and Work During Stretch-Shortening Cycles: Evidence From Whole Muscles and Permeabilized Fibers

Hessel, A. L., Monroy, J. A. & Nishikawa, K. C., Mar 29 2021, In: Frontiers in Physiology. 12, 648019.

Research output: Contribution to journal › Article › peer-review

Open Access

Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community

Stone, B. W., Li, J., Koch, B. J., Blazewicz, S. J., Dijkstra, P., Hayer, M., Hofmockel, K. S., Liu, X. J. A., Mau, R. L., Morrissey, E. M., Pett-Ridge, J., Schwartz, E. & Hungate, B. A., Dec 2021, In: Nature Communications. 12, 1, 3381.

Research output: Contribution to journal › Article › peer-review

Open Access

Predicting the current and future distribution of the western black-legged tick, Ixodes pacificus, across the Western US using citizen science collections

Tanner Porter, W., Barrand, Z. A., Wachara, J., DaVall, K., Mihaljevic, J. R., Pearson, T., Salkeld, D. J. & Nieto, N. C., Jan 2021, In: PLoS ONE. 16, 1 January, e0244754.

Research output: Contribution to journal › Article › peer-review

Open Access

Rainfall continentality, via the winter Gams angle, provides a new dimension to biogeographical distributions in the western United States

Michalet, R., Choler, P., Callaway, R. M. & Whitham, T. G., Feb 2021, In: Global Ecology and Biogeography. 30, 2, p. 384-397 14 p.

Research output: Contribution to journal › Article › peer-review

Rapid response of nitrogen cycling gene transcription to labile carbon amendments in a soil microbial community

Chuckran, P. F., Fofanov, V., Hungate, B. A., Morrissey, E. M., Schwartz, E., Walkup, J. & Dijkstra, P., May 2021, In: mSystems. 6, 3, e00161.

Research output: Contribution to journal › Article › peer-review

Open Access

Reorganized genomic taxonomy of francisellaceae enables design of robust environmental PCR assays for detection of francisella tularensis

Öhrman, C., Sahl, J. W., Sjödin, A., Uneklint, I., Ballard, R., Karlsson, L., McDonough, R. F., Sundell, D., Soria, K., Bäckman, S., Chase, K., Brindefalk, B., Sozhamannan, S., Vallesi, A., Hägglund, E., Ramirez-Paredes, J. G., Thelaus, J., Colquhoun, D., Myrtennäs, K., Birdsell, D. & 3 others, Johansson, A., Wagner, D. M. & Forsman, M., Jan 2021, In: Microorganisms. 9, 1, p. 1-21 21 p., 146.

Research output: Contribution to journal › Article › peer-review

Open Access

Roles of bacteriophages, plasmids and CRISPR immunity in microbial community dynamics revealed using time-series integrated meta-omics

Martínez Arbas, S., Narayanasamy, S., Herold, M., Lebrun, L. A., Hoopmann, M. R., Li, S., Lam, T. J., Kunath, B. J., Hicks, N. D., Liu, C. M., Price, L. B., Laczny, C. C., Gillece, J. D., Schupp, J. M., Keim, P. S., Moritz, R. L., Faust, K., Tang, H., Ye, Y., Skupin, A. & 3 others, May, P., Muller, E. E. L. & Wilmes, P., Jan 2021, In: Nature Microbiology. 6, 1, p. 123-135 13 p.

Research output: Contribution to journal › Article › peer-review

Open Access

2 Scopus citations

SaQuant: a real-time PCR assay for quantitative assessment of Staphylococcus aureus

Wood, C., Sahl, J., Maltinsky, S., Coyne, B., Russakoff, B., Yagüe, D. P., Bowers, J. & Pearson, T., Dec 2021, In: BMC microbiology. 21, 1, 174.

Research output: Contribution to journal › Article › peer-review

Open Access

Stenoparib, an inhibitor of cellular poly(Adp-ribose) polymerase, blocks replication of the sars-cov-2 and hcov-nl63 human coronaviruses in vitro

Stone, N. E., Jaramillo, S. A., Jones, A. N., Vazquez, A. J., Martz, M., Versluis, L. M., Raniere, M. O., Nunnally, H. E., Zarn, K. E., Nottingham, R., Ng, K. R., Sahl, J. W., Wagner, D. M., Knudsen, S., Settles, E. W., Keim, P. & French, C. T., 2021, In: mBio. 12, 1, p. 1-12 12 p., e03495-20.

Research output: Contribution to journal › Article › peer-review

Open Access

Strength and power capabilities predict weighted parameter ranking of saut de chat leaping performance in dancers

Rice, P. E., Nishikawa, K. & Nimphius, S., 2021, (Accepted/In press) In: Sports Biomechanics.

Research output: Contribution to journal › Article › peer-review

Subspecies discrimination based on song structure by Willow Flycatchers

Mahoney, S. M., Pasch, B. & Theimer, T. C., Jun 2021, In: Journal of Field Ornithology. 92, 2, p. 173-183 11 p.

Research output: Contribution to journal › Article › peer-review

Survival of Staphylococcus aureus on sampling swabs stored at different temperatures

Panisello Yagüe, D., Mihaljevic, J., Mbegbu, M., Wood, C. V., Hepp, C., Kyman, S., Hornstra, H., Trotter, R., Cope, E. & Pearson, T., 2021, (Accepted/In press) In: Journal of Applied Microbiology.

Research output: Contribution to journal › Article › peer-review

Open Access

Synonymous single nucleotide polymorphism in arsenic (+3) methyltransferase of the Western mosquitofish (Gambusia affinis) and its gene expression among field populations

Park, D., Propper, C. R., Wang, G. & Salanga, M. C., May 2021, In: Ecotoxicology. 30, 4, p. 711-718 8 p.

Research output: Contribution to journal › Article › peer-review

Open Access

Temporal controls on crown nonstructural carbohydrates in southwestern US tree species

Peltier, D. M. P., Guo, J., Nguyen, P., Bangs, M., Gear, L., Wilson, M., Jefferys, S., Samuels-Crow, K., Yocom, L. L., Liu, Y., Fell, M. K., Auty, D., Schwalm, C., Anderegg, W. R. L., Koch, G. W., Litvak, M. E. & Ogle, K., Mar 1 2021, In: Tree Physiology. 41, 3, p. 388-402 15 p.

Research output: Contribution to journal › Article › peer-review

The Distinctive Evolution of orfX Clostridium parabotulinum Strains and Their Botulinum Neurotoxin Type A and F Gene Clusters Is Influenced by Environmental Factors and Gene Interactions via Mobile Genetic Elements

Smith, T. J., Williamson, C. H. D., Hill, K. K., Johnson, S. L., Xie, G., Anniballi, F., Auricchio, B., Fernández, R. A., Caballero, P. A., Keim, P. & Sahl, J. W., Feb 26 2021, In: Frontiers in Microbiology. 12, 566908.

Research output: Contribution to journal › Article › peer-review

Open Access

The functional significance of bacterial predators

Hungate, B. A., Marks, J. C., Power, M. E., Schwartz, E., Groenigen, K. J. V., Blazewicz, S. J., Chuckran, P., Dijkstra, P., Finley, B. K., Firestone, M. K., Foley, M., Greenlon, A., Hayer, M., Hofmockel, K. S., Koch, B. J., Mack, M. C., Mau, R. L., Miller, S. N., Morrissey, E. M., Propster, J. R. & 6 others, Purcell, A. M., Sieradzki, E., Starr, E. P., Stone, B. W. G., Terrer, C. & Pett-Ridge, J., 2021, In: mBio. 12, 2, e00466-21.

Research output: Contribution to journal › Article › peer-review

Open Access

Biological Sciences

Research output

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