Research Output 1977 2020

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2019
1 Citation (Scopus)

A Step-by-Step Guide to Using BioNetFit

Hlavacek, W. S., Csicsery-Ronay, J. A., Baker, L. R., Ramos Álamo, M. D. C., Ionkov, A., Mitra, E. D., Suderman, R., Erickson, K. E., Dias, R., Colvin, J., Thomas, B. R. & Posner, R. G., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 391-419 29 p. (Methods in Molecular Biology; vol. 1945).

Research output: Chapter in Book/Report/Conference proceedingChapter

Language
Confidence Intervals
Workload
Appointments and Schedules
Software

Microbial Taxon-Specific Isotope Incorporation with DNA Quantitative Stable Isotope Probing

Finley, B. K., Hayer, M., Mau, R. L., Purcell, A. M., Koch, B. J., van Gestel, N. C., Schwartz, E. & Hungate, B. A., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 137-149 13 p. (Methods in Molecular Biology; vol. 2046).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotopes
DNA
Nucleic Acids

Rapid broad-scale ecosystem changes and their consequences for biodiversity

Breshears, D. D., Field, J. P., Law, D. J., Villegas, J. C., Allen, C. D., Cobb, N. S. & Bradford, J. B., Jan 1 2019, Biodiversity and Climate Change: Transforming the Biosphere. Yale University Press, p. 80-90 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biodiversity
Ecosystem
biodiversity
ecosystems
ecosystem

Stable Isotope Probing of Microorganisms in Environmental Samples with H218O

Schwartz, E., Hayer, M., Hungate, B. A. & Mau, R. L., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 129-136 8 p. (Methods in Molecular Biology; vol. 2046).

Research output: Chapter in Book/Report/Conference proceedingChapter

Isotopes
DNA
Proxy
Growth
DNA Replication
2017

Adding pieces to the puzzle: Assessing the geographic distribution of coxiella burnetii in dairy cattle and goats from the state of indiana (USA)

Bauer, A. E., Olivas, S., Hornstra, H. & Pearson, T., Jan 1 2017, The Principles and Practice of Q Fever: The One Health Paradigm. Nova Science Publishers, Inc., p. 351-358 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Coxiella burnetii
Q Fever
Goats
Public Health
Disease Outbreaks
5 Citations (Scopus)

Insect herbivore population dynamics on trees and shrubs: New approaches relevant to latent and eruptive species and life table development

Price, P. W., Cobb, N. S., Craig, T. P., Fernandes, G. W., Itami, J. K., Mopper, S. & Preszler, R. W., Jan 1 2017, Insect-Plant Interactions. CRC Press, Vol. 2. p. 1-38 38 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Herbivory
Life Tables
life tables
Population Dynamics
Insects
30 Citations (Scopus)

The impact of plant stress on herbivore population dynamics

Waring, G. L. & Cobb, N. S., Jan 1 2017, Insect-Plant Interactions. CRC Press, Vol. 4. p. 167-226 60 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Herbivory
plant stress
Population Dynamics
herbivores
population dynamics
2016
14 Citations (Scopus)

Cerrado to rupestrian grasslands: Patterns of species distribution and the forces shaping them along an altitudinal gradient

Fernandes, G. W., Almeida, H. A., Nunes, C. A., Xavier, J. H. A., Cobb, N. S., Carneiro, M. A. A., Cornelissen, T., Neves, F. S., Ribeiro, S. P., Nunes, Y. R. F., Pires, A. C. V. & Beirão, M. V., Jan 1 2016, Ecology and Conservation of Mountaintop Grasslands in Brazil. Springer International Publishing, p. 345-378 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

cerrado
Soil
biogeography
grasslands
grassland

Introduction: Mycorrhizas and Soil Structure, Moisture, and Salinity

Gehring, C. A., Nov 22 2016, Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Elsevier Inc., p. 235-240 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Salinity
soil structure
mycorrhizae
Soil
moisture
4 Citations (Scopus)

Mycorrhizas, Drought, and Host-Plant Mortality

Gehring, C. A., Swaty, R. L. & Deckert, R. J., Nov 22 2016, Mycorrhizal Mediation of Soil: Fertility, Structure, and Carbon Storage. Elsevier Inc., p. 279-298 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Droughts
mycorrhizae
host plant
host plants
drought
3 Citations (Scopus)

Operational Sex Ratio

Shuster, S. M., Apr 14 2016, Encyclopedia of Evolutionary Biology. Elsevier Inc., p. 167-174 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Sex Ratio
sexual selection
sex ratio
Animals
Proxy

Stress reactivity and exercise in women

Traustadottir, T., Jan 1 2016, Sex Hormones, Exercise and Women: Scientific and Clinical Aspects. Springer International Publishing, p. 193-208 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Exercise
Menstrual Cycle
Homeostasis
Health
2015

Associations of elevation, vegetation type, and land use with the distribution of the wupatki pocket mouse (perognathus amplus cineris)

Loverich Rieck, J. M., Peterson, S. K. & Theimer, T., Jan 1 2015, The Colorado Plateau VI: Science and Management at the Landscape Scale. University of Arizona Press, p. 233-242 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Perognathus
vegetation types
vegetation type
subspecies
land use
2 Citations (Scopus)

Bee diversity and abundance along an elevational gradient in Northern Arizona

David, R. S., Higgins, J., Burton, J. & Cobb, N. S., Jan 1 2015, The Colorado Plateau VI: Science and Management at the Landscape Scale. University of Arizona Press, p. 159-189 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Climate Change
Bees
bee
Apoidea
climate change
1 Citation (Scopus)

Distance to standing water is negatively correlated with invertebrate biomass, nestling feeding rate, and productivity in southwestern willow flyc atchers (empidonax traillii extimus)

Peterson, D., Pellegrini, A. R., McLeod, M. A. & Theimer, T., Jan 1 2015, The Colorado Plateau VI: Science and Management at the Landscape Scale. University of Arizona Press, p. 262-270 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Salix
Invertebrates
nestling
Biomass
invertebrate

Effects of introduced bison on wetlands of the kaibab plateau, Arizona

Reimondo, E., Sisk, T. D. & Theimer, T., Jan 1 2015, The Colorado Plateau VI: Science and Management at the Landscape Scale. University of Arizona Press, p. 120-135 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bison
bison
Wetlands
wetland
plateaus

Quantitative histomorphometry and quantitative polymerase chain reaction (PCR) as assessment tools for product development

Audet, R. G., Diller, R. B. & Kellar, R. S., Jun 15 2015, Molecular Histopathology and Tissue Biomarkers in Drug and Diagnostic Development. Springer New York, p. 163-174 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bandages
Polymerase Chain Reaction
Skin
Matrix Metalloproteinases
Immunohistochemistry
3 Citations (Scopus)

Quantitative histopathology for evaluation of in vivo biocompatibility associated with biomedical implants

Diller, R. B., Audet, R. G. & Kellar, R. S., Jun 15 2015, Molecular Histopathology and Tissue Biomarkers in Drug and Diagnostic Development. Springer New York, p. 153-162 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biocompatible Materials
Polypropylenes
Polytetrafluoroethylene
Equipment and Supplies
Drug-Eluting Stents
1 Citation (Scopus)

Tamarix and Soil Ecology

Meinhardt, K. A. & Gehring, C. A., May 8 2015, Tamarix: A Case Study of Ecological Change in the American West. Oxford University Press

Research output: Chapter in Book/Report/Conference proceedingChapter

Tamaricaceae
soil ecology
Tamarix
Ecology
Soil
2014

Global Change: Biospheric Impacts and Feedbacks

Hungate, B. A. & Koch, G. W., Jan 1 2014, Encyclopedia of Atmospheric Sciences: Second Edition. Elsevier Inc., p. 132-140 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

biosphere
atmospheres
energy transfer
gas exchange
atmospheric chemistry
2013
11 Citations (Scopus)

A molecular basis for intrinsic muscle properties: Implications for motor control

Nishikawa, K. C., Monroy, J. A., Powers, K. L., Gilmore, L. A., Uyeno, T. A. & Lindstedt, S. L., 2013, Advances in Experimental Medicine and Biology. Springer New York LLC, Vol. 782. p. 111-125 15 p. (Advances in Experimental Medicine and Biology; vol. 782).

Research output: Chapter in Book/Report/Conference proceedingChapter

Motor Neurons
Muscle Contraction
Muscle
Skeletal Muscle
Muscles

Bacterial Variable Number Tandem Repeats

Keim, P. S., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 274-276 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Minisatellite Repeats
minisatellite repeats
Pathogens
Nucleotides
Genetic Load

Genotyping (Subtyping) Bacteria

Keim, P. S., Feb 27 2013, Brenner's Encyclopedia of Genetics: Second Edition. Elsevier Inc., p. 321-323 3 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

genotyping
Bacteria
Genes
Genome
genome
9 Citations (Scopus)

Innovations of the rule-based modeling approach

Chylek, L. A., Stites, E. C., Posner, R. G. & Hlavacek, W. S., Jan 1 2013, Systems Biology: Integrative Biology and Simulation Tools. Springer Netherlands, p. 273-300 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell Engineering
Molecular Dynamics Simulation
Proteins
Phenotype
2 Citations (Scopus)

Natural ecosystems

Fleishman, E., Belnap, J., Cobb, N., Enquist, C. A. F., Ford, K., MacDonald, G., Pellant, M., Schoennagel, T., Schmit, L. M., Schwartz, M., van Drunick, S., Westerling, A. L. R., Keyser, A., Lucas, R. & Sabo, J., Jan 1 2013, Assessment of Climate Change in the Southwest United States: A Report Prepared for the National Climate Assessment. Island Press-Center for Resource Economics, p. 148-167 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

land cover
decomposition
land use
organic matter
climate change

Oxidative insult after ischemia/reperfusion in older adults

Traustadottir, T. & Davies, S. S., Jan 1 2013, Studies on Women's Health. Humana Press Inc., p. 263-284 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Oxidative stress
Reperfusion
Ischemia
Metabolism
Surgery
2012
2 Citations (Scopus)

Dynamic interplay in a multivariate world: Case studies in mycorrhizal and endophytic fungal interactions with herbivores

Lamit, L. J. & Gehring, C. A., Jan 3 2012, Biocomplexity of Plant-Fungal Interactions. Wiley-Blackwell, p. 185-204 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Herbivory
2011

Cardiovascular tissue engineering

Kellar, R. S., Lancaster, J. J., Goldman, S., McAllister, T. N. & L'Heureux, N., Oct 2011, Comprehensive Biomaterials. Elsevier, Vol. 5. p. 361-376 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tissue Engineering
3 Citations (Scopus)

Coral reef fishes: Opportunities, challenges and concerns

Montgomery, L. W., 2011, Coral Reefs: An Ecosystem in Transition. Springer Netherlands, p. 327-346 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

coral reef
reef
fish
habitat
structural change
1 Citation (Scopus)

Forensic Analysis in Bacterial Pathogens

Okinaka, R. T., Hill, K. H., Pearson, T. R., Foster, J. T., Vogler, A. J., Tuanyok, A., Wagner, D. M. & Keim, P. S., 2011, Microbial Forensics. Elsevier Inc., p. 259-276 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anthrax
Burkholderia pseudomallei
Bacillus anthracis
Microbiology
Clostridium botulinum
6 Citations (Scopus)

Microbial Forensic Investigation of the Anthrax-Letter Attacks

Keim, P. S., Budowle, B. & Ravel, J., 2011, Microbial Forensics. Elsevier Inc., p. 15-25 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anthrax
Spores
Bacillus anthracis
Communicable Diseases
Biomedical Research
2 Citations (Scopus)

Microbial Forensic Investigations in the Context of Bacterial Population Genetics

Keim, P. S., Pearson, T. R., Budowle, B., Wilson, M. & Wagner, D. M., 2011, Microbial Forensics. Elsevier Inc., p. 545-559 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Population Genetics
DNA Fingerprinting
Genetic Structures
DNA
Medical Genetics
5 Citations (Scopus)

Microbial Forensics: Educating the Workforce and the Community

Schutzer, S. E., Budowle, B. & Keim, P. S., 2011, Microbial Forensics. Elsevier Inc., p. 667-680 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Bioterrorism
Education
Law Enforcement
Administrative Personnel
Technology

Microbial Forensics, What Next?

Keim, P. S., Morse, S. A., Schutzer, S. E., Breeze, R. G. & Budowle, B., 2011, Microbial Forensics. Elsevier Inc., p. 693-696 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Law Enforcement
Inventions
Anthrax
Disease Outbreaks
Public Health

Ricin Forensics: Comparisons to Microbial Forensics

Foster, J. T., Bull, R. L. & Keim, P. S., 2011, Microbial Forensics. Elsevier Inc., p. 315-326 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ricin
Ricinus
Bacteria
Plant DNA
Clostridium botulinum
8 Citations (Scopus)

Testicular Structure and Control of Sperm Development in Amphibians

Propper, C. R., 2011, Hormones and Reproduction of Vertebrates - Volume 2. Elsevier Inc., p. 39-53 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Amphibians
amphibians
Spermatozoa
spermatozoa
1 Citation (Scopus)

The Kameido Anthrax Incident: A Microbial Forensics Case Study

Kaufmann, A. F. & Keim, P. S., 2011, Microbial Forensics. Elsevier Inc., p. 5-13 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anthrax
Tokyo
Sarin
Railroads
Bacillus anthracis
2010
12 Citations (Scopus)

A community and ecosystem genetics approach to conservation biology andmanagement

Whitham, T. G., Gehring, C. A., Evans, L. M., LeRoy, C. J., Bangert, R. K., Schweitzer, J. A., Allan, G. J., Barbour, R. C., Fischer, D. G., Potts, B. M. & Bailey, J. K., Jan 1 2010, Molecular Approaches in Natural Resource Conservation and Management. Cambridge University Press, p. 50-73 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ecosystem
Biological Sciences
ecosystems
Genotype
Phenotype
3 Citations (Scopus)

Population Genetics of Bacillus: Phylogeography of Anthrax in North America

Kenefic, L. J., Okinaka, R. T. & Keim, P. S., Apr 9 2010, Bacterial Population Genetics in Infectious Disease. John Wiley and Sons, p. 167-180 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Phylogeography
Anthrax
Population Genetics
North America
Bacillus
2009
42 Citations (Scopus)

Molecular basis of rare aminoglycoside susceptibility and pathogenesis of Burkholderia pseudomalleiclinical isolates from Thailand

Trunck, L. A., Propst, K. L., Wuthiekanun, V., Tuanyok, A., Beckstrom-Sternberg, S. M., Beckstrom-Sternberg, J. S., Peacock, S. J., Keim, P. S., Dow, S. W. & Schweizer, H. P., Sep 2009, PLoS Neglected Tropical Diseases. 9 ed. Vol. 3. e0000519

Research output: Chapter in Book/Report/Conference proceedingChapter

Burkholderia
Aminoglycosides
Thailand
Macrolides
Operon

Sexual selection and mating systems

Shuster, S. M., Dec 30 2009, Two Centuries of Darwin. National Academy of Sciences, Vol. 3. p. 191-212 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

mating systems
sexual selection
Animals
Nucleotides
Sex Characteristics

Signal Transduction in Avian Intrapulmonary Chemoreceptors: Structure, Evolution and Function

Hempleman, S. C. & Pilarski, J. Q., 2009, Airway Chemoreceptors in the Vertebrates: Structure, Evolution and Function. Zaccone, G., Cutz, E., Adriaensen, D. & Maucerri, A. (eds.). Enfield, New Hampshire, USA: Science Publishers, p. 213-234

Research output: Chapter in Book/Report/Conference proceedingChapter

2008

Ecophysiology

Ferry-Graham, L. A. & Gibb, A. C., Jan 1 2008, Encyclopedia of Ecology, Five-Volume Set. Elsevier Inc., p. 1121-1125 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

ecophysiology
organisms
Ecology
biotic factor
Cell Survival
4 Citations (Scopus)

Longstanding Taxonomic Enigmas within the 'Bacillus cereus group' are on the Verge of being Resolved by Far-reaching Molecular Developments: forecasts on the possible outcome by an ad hoc team

Turnbull, P. C. B., Jackson, P. J., Hill, K. K., Keim, P. S., Kolstø, A. B. & Beecher, D. J., Apr 16 2008, Applications and Systematics of Bacillus and Relatives. wiley, p. 23-36 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Foodborne Diseases
Bacillus cereus
3 Citations (Scopus)

Mating Systems

Shuster, S. M., Jan 1 2008, Encyclopedia of Ecology, Five-Volume Set. Elsevier Inc., p. 2266-2273 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

mating systems
Sex Characteristics
reproductive strategy
gender differences
Systems Analysis
26 Citations (Scopus)

The expression of crustacean mating strategies

Shuster, S. M., Jan 1 2008, Alternative Reproductive Tactics: An Integrative Approach. Cambridge University Press, p. 224-250 27 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Crustacea
Salmon
sexual selection
inheritance (genetics)
genetic polymorphism
2007
20 Citations (Scopus)

Algae

Nakagswa, H. & Montgomery, L. W., May 21 2007, Dietary Supplements for the Health and Quality of Cultured Fish. CABI Publishing, p. 133-167 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

algae
12 Citations (Scopus)

Host plants mediate aphid-ant mutualisms and their effects on community structure and diversity

Wimp, G. M. & Whitham, T. G., Jan 1 2007, Ecological Communities: Plant Mediation in Indirect Interaction Webs. Cambridge University Press, p. 275-305 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Aphids
Ants
Aphidoidea
Formicidae
community structure
2 Citations (Scopus)

Mycorrhizal plants and vertebrate seed and spore dispersal: Incorporating mycorrhizas into the seed dispersal paradigm

Theimer, T. & Gehring, C. A., Aug 30 2007, Seed Dispersal: Theory and its Application in a Changing World. CABI Publishing, p. 463-478 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Seed Dispersal
spore dispersal
seed dispersal
Spores
mycorrhizae
28 Citations (Scopus)

Mycorrhizas: Symbiotic Mediators of Rhizosphere and Ecosystem Processes

Johnson, N. & Gehring, C. A., 2007, The Rhizosphere. Elsevier Inc., p. 73-100 28 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Rhizosphere
mycorrhizae
mycorrhizal fungi
Ecosystem
rhizosphere